View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14359_low_3 (Length: 584)
Name: NF14359_low_3
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 11 - 565
Target Start/End: Original strand, 26794368 - 26794917
Alignment:
| Q |
11 |
agcataggataggaggcaagcatg-aaaacaatgatagcaacttcccacacgcattgccaaagatatctccggccaactaaacacctatgcatgtaggag |
109 |
Q |
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| T |
26794368 |
agcataggataggaggcaagcatggaaaacaatgatagcaacttcccacacgcattgccaaagatatctccggccaactaaacacctatgcatgtagg-- |
26794465 |
T |
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| Q |
110 |
gttcaaagtttgatcactatactaacaagttttcttcatgtcacaaactaattactaacattcgatttgagttttgaatataataaaatatgataagaga |
209 |
Q |
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| T |
26794466 |
-ttcaaagtttgatcactatactaacaagttttcttcatgtcacaaactaattactaacattcgatttgagttttgaatataacaaaatatgataagaga |
26794564 |
T |
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| Q |
210 |
caaaactccactcaaaacagccaaccaagttttgtgaaagaaattataagttctcatgtaggtgatacttagagaaaaattagtaatttaaatggaactc |
309 |
Q |
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| T |
26794565 |
caaaactccactcaaaacagccaaccaagttttgtgaaagaaattataagttctcatgtaggtgatacttggagaaaaattagtaatttaaatggaactc |
26794664 |
T |
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| Q |
310 |
gaagcaagaagaaacactatgatcactataacagtctaaaaagcaaaactagcagacaaaactaccaaacctatatgtagggcatgcatgctacacacaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26794665 |
gaagcaagaagaaacactatgatcactataacagtctaaaaagcaaaactagcagacaaaactaccaaacctatatgtagggcatgcatgctacacacaa |
26794764 |
T |
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| Q |
410 |
actataaagataaaaaatagacagcaattaatgtataatatataatcaagttattggtatttcaaacaaatcaataattaagctctctcggtctattatt |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26794765 |
actataaagataaaaaatagacagcaattaatgtataatatataatcaagttattggtatttcaaacaaaccaataattaagctctctcggtctattatt |
26794864 |
T |
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| Q |
510 |
gattcaaaatagtactgtctctcttatgctactgatgatttagcaacaaactccca |
565 |
Q |
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| T |
26794865 |
gattcaaaa---cactgtctctcttatgctactgatgatttagcaacaaactccca |
26794917 |
T |
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