View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14359_low_40 (Length: 271)
Name: NF14359_low_40
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 45126357 - 45126126
Alignment:
| Q |
16 |
attaacatgaagttaaaagaaaagtttagataaattatttacactttctcgccttctttgtgcatatggaggtgagcgaaactgatacttaagtaattgt |
115 |
Q |
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| T |
45126357 |
attaacatgaagttaaaagaaaagttta---------tttacactttttcgccttctttgtgcatatggaggtgagcaaaactgatacttaagtaattgt |
45126267 |
T |
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| Q |
116 |
aaagggaccatatcaaaagtgcaacaaacatgattgcaaaaataagctccatagctgaaacaattccaattgtaggcatcaccaggaatggacgtctcag |
215 |
Q |
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| T |
45126266 |
aaagggaccatatcaaaagtgcaacaaacatgattgcaaaaataagctccatagctgaaacaattccaattgtaggcatcaccaggaatggacgtctcag |
45126167 |
T |
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| Q |
216 |
gaaacataaacannnnnnnagagcgccagtactgaaacaaa |
256 |
Q |
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| T |
45126166 |
gaaacataaacatttttttagagcgccagtactgaaacaaa |
45126126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 49 - 227
Target Start/End: Complemental strand, 45109348 - 45109170
Alignment:
| Q |
49 |
attatttacactttctcgccttctttgtgcatatggaggtgagcgaaactgatacttaagtaattgtaaagggaccatatcaaaagtgcaacaaacatga |
148 |
Q |
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| T |
45109348 |
attatttacattttctcatcttgtttgtgcatgcggaggtgatcgaaaccggtatgtaagtaattggaaagggaccatatcaagagtgcagcaaacatga |
45109249 |
T |
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| Q |
149 |
ttgcaaaaataagctccatagctgaaacaattccaattgtaggcatcaccaggaatggacgtctcaggaaacataaaca |
227 |
Q |
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| T |
45109248 |
gtacaaaaataagctccatagctgaaacaattccaattggagacataaccaggaatggacgtctcaggaagcctaaaca |
45109170 |
T |
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