View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14359_low_56 (Length: 205)

Name: NF14359_low_56
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14359_low_56
NF14359_low_56
[»] chr3 (4 HSPs)
chr3 (19-95)||(17509910-17509986)
chr3 (19-95)||(42540638-42540713)
chr3 (19-94)||(32304709-32304783)
chr3 (38-95)||(34817830-34817887)
[»] chr1 (4 HSPs)
chr1 (19-95)||(35122722-35122798)
chr1 (19-95)||(49653211-49653287)
chr1 (19-95)||(36142659-36142736)
chr1 (19-95)||(47112638-47112713)
[»] chr7 (2 HSPs)
chr7 (20-95)||(30766191-30766266)
chr7 (20-59)||(17278946-17278985)
[»] chr6 (4 HSPs)
chr6 (20-95)||(27129388-27129463)
chr6 (19-95)||(16146622-16146698)
chr6 (19-95)||(20746058-20746134)
chr6 (20-95)||(12260923-12261001)
[»] chr5 (2 HSPs)
chr5 (20-95)||(6794220-6794295)
chr5 (22-95)||(23083087-23083160)
[»] chr2 (5 HSPs)
chr2 (20-95)||(28189993-28190068)
chr2 (19-95)||(19298006-19298082)
chr2 (19-95)||(20686174-20686250)
chr2 (27-95)||(40468523-40468592)
chr2 (20-59)||(8029481-8029520)
[»] chr4 (2 HSPs)
chr4 (20-94)||(9086771-9086847)
chr4 (20-92)||(40681000-40681074)
[»] chr8 (1 HSPs)
chr8 (20-95)||(13462652-13462730)
[»] scaffold0202 (1 HSPs)
scaffold0202 (38-95)||(21708-21765)


Alignment Details
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 17509986 - 17509910
Alignment:
Q  19 ataactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaattttttctgaggtagattgag 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  17509986 ataactagcacaacacccaattgaatccaaggttgaagaacgacaccaatttccaattttttctgaggtagattgag 17509910  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 42540713 - 42540638
Alignment:
Q  19 ataactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaattttttctgaggtagattgag 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||    
T  42540713 ataactagcacaacacccaattgaatccaaggttgaagaacgacacc-aatttctaatttttctgaggtagattgag 42540638  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 32304783 - 32304709
Alignment:
Q  19 ataactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaattttttctgaggtagattga 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || ||||||||||||||||    
T  32304783 ataactagcacaacacccaattgaatccaaggttgaagaacgacaccaatttccaa-ttattctgaggtagattga 32304709  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 34817830 - 34817887
Alignment:
Q  38 attgaatccaaggttgaagaacgacaccgattttcaattttttctgaggtagattgag 95  Q
    |||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||    
T  34817830 attgaatccaaggttgaagagcggcaccgatttccaattttttctgaggtagattgag 34817887  T

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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 35122722 - 35122798
Alignment:
Q  19 ataactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaattttttctgaggtagattgag 95  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  35122722 ataactagcacaacacccaattgaatccaaggttgatgaacgacaccgatttccaattttttctgaggtagattgag 35122798  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 49653211 - 49653287
Alignment:
Q  19 ataactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaattttttctgaggtagattgag 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  49653211 ataactagcacaacacccaattgaatccaaggttgaagaacgacaccaatttccaattttttctgaggtagattgag 49653287  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 36142659 - 36142736
Alignment:
Q  19 ataactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaa-ttttttctgaggtagattgag 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  36142659 ataactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaatttttttttgaggtagattgag 36142736  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 47112638 - 47112713
Alignment:
Q  19 ataactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaattttttctgaggtagattgag 95  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||| |||| ||| || |||||||||||||||||    
T  47112638 ataactagcacaacacccaattgaattcaagattgaagaacgacaccaatttccaa-ttattctgaggtagattgag 47112713  T

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Target: chr7 (Bit Score: 68; Significance: 1e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 30766191 - 30766266
Alignment:
Q  20 taactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaattttttctgaggtagattgag 95  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  30766191 taactagcacaacacccaattgaatccaaggttgaagaacaacaccaattttcaattttttctgaggtagattgag 30766266  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 17278946 - 17278985
Alignment:
Q  20 taactagcacaacacccaattgaatccaaggttgaagaac 59  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17278946 taactagcacaacacccaattgaatccaaggttgaagaac 17278985  T

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Target: chr6 (Bit Score: 68; Significance: 1e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 27129388 - 27129463
Alignment:
Q  20 taactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaattttttctgaggtagattgag 95  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  27129388 taactagcacaacacccaattgaatccaaggttgaagaacaacaccaattttcaattttttctgaggtagattgag 27129463  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 16146622 - 16146698
Alignment:
Q  19 ataactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaattttttctgaggtagattgag 95  Q
    |||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||||||||||||||||||||||    
T  16146622 ataactagcacaacacccaattgaatccaaggttgaagaatggcaccaatttccaattttttctgaggtagattgag 16146698  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 20746134 - 20746058
Alignment:
Q  19 ataactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaattttttctgaggtagattgag 95  Q
    |||||||||||||||||||||||||||||||||||||||| | |||| |||| |||||| |||||||||||||||||    
T  20746134 ataactagcacaacacccaattgaatccaaggttgaagaagggcaccaatttccaatttgttctgaggtagattgag 20746058  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 12261001 - 12260923
Alignment:
Q  20 taactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaa---ttttttctgaggtagattgag 95  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| |||| |||   |||||||||||||||||||||    
T  12261001 taactagcacaacacccaattgaatccaaggttgaagaacagcaccaatttccaatttttttttctgaggtagattgag 12260923  T

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Target: chr5 (Bit Score: 68; Significance: 1e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 6794295 - 6794220
Alignment:
Q  20 taactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaattttttctgaggtagattgag 95  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  6794295 taactagcacaacacccaattgaatccaaggttgaagaacaacaccaattttcaattttttctgaggtagattgag 6794220  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 23083087 - 23083160
Alignment:
Q  22 actagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaattttttctgaggtagattgag 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  23083087 actagcacaacacccaattgaatccaaggttgaagaacgacaccattttccaattttttctgaggtagattgag 23083160  T

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Target: chr2 (Bit Score: 68; Significance: 1e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 28189993 - 28190068
Alignment:
Q  20 taactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaattttttctgaggtagattgag 95  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  28189993 taactagcacaacacccaattgaatccaaggttgaagaacaacaccaattttcaattttttctgaggtagattgag 28190068  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 19298082 - 19298006
Alignment:
Q  19 ataactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaattttttctgaggtagattgag 95  Q
    |||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||||||||||||||||||||||    
T  19298082 ataactagcacaacacccaattgaatccaaggttgaagaagggcaccaatttccaattttttctgaggtagattgag 19298006  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 20686174 - 20686250
Alignment:
Q  19 ataactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaattttttctgaggtagattgag 95  Q
    |||||||||||||  ||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  20686174 ataactagcacaatgcccaattgaattcaaggttgaagaacgacaccaatttccaattttttctgaggtagattgag 20686250  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 40468592 - 40468523
Alignment:
Q  27 cacaacacccaattgaatccaaggttgaagaacgacaccgattttcaa-ttttttctgaggtagattgag 95  Q
    ||||||||||||||||||||||||||||| |||| ||||  ||| ||| |||||||||||||||||||||    
T  40468592 cacaacacccaattgaatccaaggttgaataacggcaccattttccaatttttttctgaggtagattgag 40468523  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 8029520 - 8029481
Alignment:
Q  20 taactagcacaacacccaattgaatccaaggttgaagaac 59  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8029520 taactagcacaacacccaattgaatccaaggttgaagaac 8029481  T

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Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 9086847 - 9086771
Alignment:
Q  20 taactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaatttttt--ctgaggtagattga 94  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||  ||||||||||||||    
T  9086847 taactagcacaacacccaattgaatccaaggttgaagaacaacaccaatttccaatttttttcctgaggtagattga 9086771  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 40681000 - 40681074
Alignment:
Q  20 taactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaa--ttttttctgaggtagatt 92  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||| |||  ||||||||||||||||||    
T  40681000 taactagcacaacacccaattgaatccaaggttgaagaacaacaccaatttccaattttttttctgaggtagatt 40681074  T

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Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 13462652 - 13462730
Alignment:
Q  20 taactagcacaacacccaattgaatccaaggttgaagaacgacaccgattttcaa---ttttttctgaggtagattgag 95  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| |||| |||   |||||||||||||||||||||    
T  13462652 taactagcacaacacccaattgaatccaaggttgaagaacatcaccaatttccaaaatttttttctgaggtagattgag 13462730  T

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Target: scaffold0202 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 21765 - 21708
Alignment:
Q  38 attgaatccaaggttgaagaacgacaccgattttcaattttttctgaggtagattgag 95  Q
    |||||||||||||||||||| || ||||||||| ||||||||| ||||||||||||||    
T  21765 attgaatccaaggttgaagagcggcaccgatttccaattttttatgaggtagattgag 21708  T

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