View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14359_low_6 (Length: 490)
Name: NF14359_low_6
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 10 - 473
Target Start/End: Complemental strand, 43503693 - 43503230
Alignment:
| Q |
10 |
atgaagtcactgcgctatctagatgcgcactttaatgaactacatgggcttcctattgcaatcgggaaattgactagtcttgaatttctaaacctgagta |
109 |
Q |
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| T |
43503693 |
atgaagtcactgcgctatctagatgcgcactttaatgaactacatgggcttcctattgcaatcgggaaattgactagtcttgaatttctaaacctgagta |
43503594 |
T |
|
| Q |
110 |
gtaacttcagcgatcttcaagaaataccagagacatttggtgatctgagtagcctcaaggaattggatcttagcaacaatcaaattcatgcacttcctga |
209 |
Q |
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| T |
43503593 |
gtaacttcagcgatcttcaagaaataccagagacatttggtgatttgagtagcctcaaggaattggatcttagcaacaatcaaattcatgcacttcctga |
43503494 |
T |
|
| Q |
210 |
tacatttggccgccttgatagtttaatcaagctaaacttagagcagaaccctattgaattgccacctatggagactgtaaatgaaggtgtccaagccatc |
309 |
Q |
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| T |
43503493 |
tacatttggccgccttgatagtttaatcaagctaaacttagagcagaaccctattgaattgccacctatggagattgtaaatgaaggtgtccaagccatc |
43503394 |
T |
|
| Q |
310 |
aagtcttacatggccaagaggtggattgacatattggcagaggaagagaggaaaaagacacatgaatcggaagaacaaggacagagtggttggctaacac |
409 |
Q |
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| T |
43503393 |
aagtcttacatggccaagaggtggattgatatattggcagaggaagagaggaaaaagacacatgaatcggaagaacaaggacagagtggttggctaacaa |
43503294 |
T |
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| Q |
410 |
gaagtctctccatgttgaagaacgttcctggaaatgtaactgagtatatcgaaagtgtcgtctc |
473 |
Q |
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| T |
43503293 |
gaagtctctccatgttgaagaacgttcctggaaatgtaactgagtatattgaaagtgtcgtctc |
43503230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 43 - 356
Target Start/End: Complemental strand, 34564544 - 34564231
Alignment:
| Q |
43 |
aatgaactacatgggcttcctattgcaatcgggaaattgactagtcttgaatttctaaacctgagtagtaacttcagcgatcttcaagaaataccagaga |
142 |
Q |
| |
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||||| |||||||||||||| ||| | |||| | |||||| ||| ||| |||| ||| |||| ||||| ||| |||||| ||||| | ||||||| |
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| T |
34564544 |
aatgagctacatgggcttccagcagcatttgggagactgactactctggaaattctcaacttgagcagtaatttcgctgatcttaaagaacttccagaga |
34564445 |
T |
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| Q |
143 |
catttggtgatctgagtagcctcaaggaattggatcttagcaacaatcaaattcatgcacttcctgatacatttggccgccttgatagtttaatcaagct |
242 |
Q |
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||||||| || ||| || ||||||||||||||| | || || ||||| |||||||||||||| ||||||||||| ||||||||| ||| | |||||| |
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| T |
34564444 |
catttggcgaattgactaatctcaaggaattggatgtcagtaataatcagattcatgcacttccagatacatttggttgccttgataatttgaccaagct |
34564345 |
T |
|
| Q |
243 |
aaacttagagcagaaccctattgaattgccacctatggagactgtaaatgaaggtgtccaagccatcaagtcttacatggccaagaggtggattgacata |
342 |
Q |
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||||| || ||||| ||| ||||| ||||||| |||||| |||||| |||| ||||||||||| || ||| ||||||||||||||||||| || |
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| T |
34564344 |
caacttggaacagaatcctcttgaactgccaccagtggagattgtaaaccaaggggtccaagccataaaaacttttatggccaagaggtggattgctatg |
34564245 |
T |
|
| Q |
343 |
ttggcagaggaaga |
356 |
Q |
| |
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|||| ||||||||| |
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| T |
34564244 |
ttggaagaggaaga |
34564231 |
T |
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