View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14359_low_7 (Length: 484)

Name: NF14359_low_7
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14359_low_7
NF14359_low_7
[»] chr4 (18 HSPs)
chr4 (18-452)||(251634-252067)
chr4 (378-440)||(5553780-5553842)
chr4 (73-172)||(3749989-3750088)
chr4 (200-256)||(5852254-5852310)
chr4 (73-172)||(5560046-5560145)
chr4 (200-271)||(5570365-5570436)
chr4 (199-271)||(5582574-5582646)
chr4 (199-256)||(5554112-5554169)
chr4 (377-438)||(5885920-5885981)
chr4 (376-440)||(3749523-3749587)
chr4 (207-271)||(5559897-5559961)
chr4 (376-432)||(5847704-5847760)
chr4 (199-271)||(5858952-5859024)
chr4 (207-271)||(5894459-5894523)
chr4 (178-269)||(5538486-5538577)
chr4 (371-437)||(5559583-5559649)
chr4 (207-244)||(3749867-3749904)
chr4 (92-160)||(5554258-5554326)
[»] scaffold0454 (1 HSPs)
scaffold0454 (371-429)||(1018-1076)
[»] chr8 (2 HSPs)
chr8 (371-429)||(1485836-1485894)
chr8 (178-238)||(1486170-1486230)


Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 251634 - 252067
Alignment:
Q  18 gttattactgcatatcagtattcaaatttcatttacctccagaaaatgtctttttgatcaacaatcattgcctctccaattaaaaaacaatctcacattc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  251634 gttattactgcatatcagtattcaaatttcatttacctccagaaaatgtctttttgatcaacaatcattgcctctccaattaaaaaacaatctcacattc 251733  T
Q  118 aagcctcaaagttccaccaaactgaagctgtggaatcaaagcaatgtttgctgcacttgctgaagaatcaactaccgatgaatttgacaattcaagtagt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  251734 aagcctcaaagttccaccaaactgaagctgtggaatcaaagcaatgtttgctgcacttgctgaagaatcaattaccgatgaatttgacaattcaagtagt 251833  T
Q  218 cttttctgtctccaacatctccaaaaactgaatttggctgctaacaatttcaatagagatttctcgactcaaaaggtggtaactcttgatatctctatta 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  251834 cttttctgtctccaacatctccaaaaactgaatttggctgctaacaatttcaatagagatttctcgactcaaaatgtggtaactcttgatatctctatta 251933  T
Q  318 attcttactcactgggacgagagctgaaacttgagaactcaaatctacaaagcaagggcatgaatggggcaatgctttgttgccgctgtgtgatctgcaa 417  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  251934 attcttactcactgggacgagagctgaaacttgagacctcaaatctacaaagcaagggcatgaatggggcaatgctttgttgccgctgtgtgatctgcaa 252033  T
Q  418 gagttgagcatgtctaactgtgaatcgatctatca 452  Q
    |||||||||||||||||||||| ||||||||||||    
T  252034 gagttgagcatgtctaactgtg-atcgatctatca 252067  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 5553842 - 5553780
Alignment:
Q  378 tgaatggggcaatgctttgttgccgctgtgtgatctgcaagagttgagcatgtctaactgtga 440  Q
    ||||||| ||||||||||||||||||||||||| || |||||||||||||||| |||||||||    
T  5553842 tgaatggagcaatgctttgttgccgctgtgtgaactacaagagttgagcatgtataactgtga 5553780  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 73 - 172
Target Start/End: Complemental strand, 3750088 - 3749989
Alignment:
Q  73 gatcaacaatcattgcctctccaattaaaaaacaatctcacattcaagcctcaaagttccaccaaactgaagctgtggaatcaaagcaatgtttgctgca 172  Q
    |||||||||||||||   || |||||||||||||||||||||||||| | | ||||||||||||||||  |  |||||||| |||||| || ||||||||    
T  3750088 gatcaacaatcattgttgcttcaattaaaaaacaatctcacattcaaccatgaaagttccaccaaactagaattgtggaataaaagcattgcttgctgca 3749989  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 5852254 - 5852310
Alignment:
Q  200 tttgacaattcaagtagtcttttctgtctccaacatctccaaaaactgaatttggct 256  Q
    ||||| |||||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  5852254 tttgataattcaagtagtcttttcagtctcgaacatctccagaaactgaatttggct 5852310  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 172
Target Start/End: Complemental strand, 5560145 - 5560046
Alignment:
Q  73 gatcaacaatcattgcctctccaattaaaaaacaatctcacattcaagcctcaaagttccaccaaactgaagctgtggaatcaaagcaatgtttgctgca 172  Q
    |||||||||||||||   |  |||||||||||||||||||||||||| ||| ||  |||||||||||| |   ||||||||||||||| || ||||||||    
T  5560145 gatcaacaatcattgttgcatcaattaaaaaacaatctcacattcaatcctgaatattccaccaaactaatattgtggaatcaaagcactgcttgctgca 5560046  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 271
Target Start/End: Original strand, 5570365 - 5570436
Alignment:
Q  200 tttgacaattcaagtagtcttttctgtctccaacatctccaaaaactgaatttggctgctaacaatttcaat 271  Q
    ||||| |||||||||||||||||  ||||||| ||||| |||||| |||| ||||||| |||||||||||||    
T  5570365 tttgataattcaagtagtctttttagtctccatcatcttcaaaaattgaacttggctgataacaatttcaat 5570436  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 5582574 - 5582646
Alignment:
Q  199 atttgacaattcaagtagtcttttctgtctccaacatctccaaaaactgaatttggctgctaacaatttcaat 271  Q
    |||||| ||| |||| ||||||||  |||| |||||||| |||||| |||| |||||||||||||||||||||    
T  5582574 atttgataatgcaagcagtctttttagtcttcaacatcttcaaaaattgaacttggctgctaacaatttcaat 5582646  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 5554169 - 5554112
Alignment:
Q  199 atttgacaattcaagtagtcttttctgtctccaacatctccaaaaactgaatttggct 256  Q
    |||||| | |||||||||||||||| ||||| | |||||||| |||||||||||||||    
T  5554169 atttgatagttcaagtagtcttttcagtctcgatcatctccagaaactgaatttggct 5554112  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 438
Target Start/End: Original strand, 5885920 - 5885981
Alignment:
Q  377 atgaatggggcaatgctttgttgccgctgtgtgatctgcaagagttgagcatgtctaactgt 438  Q
    |||||||| | ||||||||||| |||||| ||||  |||||||||||||||||| |||||||    
T  5885920 atgaatggagtaatgctttgttaccgctgcgtgacttgcaagagttgagcatgtataactgt 5885981  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 3749587 - 3749523
Alignment:
Q  376 catgaatggggcaatgctttgttgccgctgtgtgatctgcaagagttgagcatgtctaactgtga 440  Q
    ||||||| | ||||||||||||||||| || ||||  ||||||| |||||||||||| |||||||    
T  3749587 catgaattgagcaatgctttgttgccgttgcgtgacttgcaagaattgagcatgtcttactgtga 3749523  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 5559961 - 5559897
Alignment:
Q  207 attcaagtagtcttttctgtctccaacatctccaaaaactgaatttggctgctaacaatttcaat 271  Q
    ||||||| ||||||||| || | ||||| ||||| |||||||||||||||| |||| ||||||||    
T  5559961 attcaagcagtcttttcagtttgcaacacctccagaaactgaatttggctgataactatttcaat 5559897  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 432
Target Start/End: Original strand, 5847704 - 5847760
Alignment:
Q  376 catgaatggggcaatgctttgttgccgctgtgtgatctgcaagagttgagcatgtct 432  Q
    ||||||||| ||||||||||||||||  || |||| |||||| ||||||||||||||    
T  5847704 catgaatggagcaatgctttgttgcctttgcgtgacctgcaaaagttgagcatgtct 5847760  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 5859024 - 5858952
Alignment:
Q  199 atttgacaattcaagtagtcttttctgtctccaacatctccaaaaactgaatttggctgctaacaatttcaat 271  Q
    |||||| ||| |||| ||||| ||  |||||||||||||||||||| |||| ||||||  |||||||||||||    
T  5859024 atttgaaaatacaagcagtctatttggtctccaacatctccaaaaagtgaacttggcttttaacaatttcaat 5858952  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 5894459 - 5894523
Alignment:
Q  207 attcaagtagtcttttctgtctccaacatctccaaaaactgaatttggctgctaacaatttcaat 271  Q
    ||||||| |||||||||  ||||| ||||||| |||||||||| ||||||  |||||||||||||    
T  5894459 attcaagcagtcttttcaatctcctacatctcaaaaaactgaacttggcttataacaatttcaat 5894523  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 269
Target Start/End: Original strand, 5538486 - 5538577
Alignment:
Q  178 tgaagaatcaactaccgatgaatttgacaattcaagtagtcttttctgtctccaacatctccaaaaactgaatttggctgctaacaatttca 269  Q
    |||||||||||  || | || |||||| ||| |||||||||||||  |||| ||| |||| || ||| |||| |||||||||||||||||||    
T  5538486 tgaagaatcaatcactggtggatttgataatacaagtagtctttttagtcttcaaaatcttcagaaattgaacttggctgctaacaatttca 5538577  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 437
Target Start/End: Complemental strand, 5559649 - 5559583
Alignment:
Q  371 aagggcatgaatggggcaatgctttgttgccgctgtgtgatctgcaagagttgagcatgtctaactg 437  Q
    |||||||||||||| ||||||||||||||||| || ||| |||  ||||  ||| ||||||||||||    
T  5559649 aagggcatgaatggagcaatgctttgttgccgttgcgtggtctagaagaactgaccatgtctaactg 5559583  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 3749904 - 3749867
Alignment:
Q  207 attcaagtagtcttttctgtctccaacatctccaaaaa 244  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  3749904 attcaagtagtcttttcagtcttcaacatctccaaaaa 3749867  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 5554326 - 5554258
Alignment:
Q  92 tccaattaaaaaacaatctcacattcaagcctcaaagttccaccaaactgaagctgtggaatcaaagca 160  Q
    ||||||||||||| || |||||||| || ||  |||||||||| ||||||| | | |||||||||||||    
T  5554326 tccaattaaaaaataacctcacatttaacccaaaaagttccactaaactgaggatatggaatcaaagca 5554258  T

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Target: scaffold0454 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 429
Target Start/End: Complemental strand, 1076 - 1018
Alignment:
Q  371 aagggcatgaatggggcaatgctttgttgccgctgtgtgatctgcaagagttgagcatg 429  Q
    |||| ||||||||| ||||||| |||||||||||| |||| ||||||| ||||||||||    
T  1076 aaggacatgaatggagcaatgccttgttgccgctgcgtgagctgcaagtgttgagcatg 1018  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 429
Target Start/End: Complemental strand, 1485894 - 1485836
Alignment:
Q  371 aagggcatgaatggggcaatgctttgttgccgctgtgtgatctgcaagagttgagcatg 429  Q
    |||| ||||||||| ||||||| |||||||||||| |||| ||||||| ||||||||||    
T  1485894 aaggacatgaatggagcaatgccttgttgccgctgcgtgagctgcaagtgttgagcatg 1485836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 1486230 - 1486170
Alignment:
Q  178 tgaagaatcaactaccgatgaatttgacaattcaagtagtcttttctgtctccaacatctc 238  Q
    |||||||||||  || | || |||| |||||||||||||||||||  ||||||||||||||    
T  1486230 tgaagaatcaatcactggtggatttaacaattcaagtagtctttttagtctccaacatctc 1486170  T

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