View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14359_low_9 (Length: 456)
Name: NF14359_low_9
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_low_9 |
 | |
|
| [»] scaffold0130 (1 HSPs) |
| | |
|
| [»] scaffold0076 (1 HSPs) |
| | |
|
| [»] scaffold0208 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 451
Target Start/End: Complemental strand, 4281772 - 4281337
Alignment:
| Q |
16 |
ttcatatctgcattggtttttcggtggatatatatatgcactgtgctgcaattggcttatagttttttggcaataatctagtatgataatggatattttg |
115 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4281772 |
ttcatatctgcattggtttttcggtagatatatatatgcactgtgctgcaattggcttatagttttttggcaataatctagtatgataatggatattttg |
4281673 |
T |
|
| Q |
116 |
gagacaataggttggaccttcatccctgatttcattaatactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4281672 |
gagacaataggttggaccttcatccctgatttcattaatactacagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaacga |
4281573 |
T |
|
| Q |
216 |
actgaatttctcatctccatcagcccagttatcggtaaatgaagtggagtgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacggt |
315 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4281572 |
actcaatttctcatctccatcagcccggttatcggtaaatgaagtgtagtgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacagt |
4281473 |
T |
|
| Q |
316 |
ggaggtcaattcgtcaccatcatagtcatccttcttaacaggcggatatcatatacaatcatatcacgagaaaggaacccatataaatgctcaaagcagc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | | |||||||||||||||||| |
|
|
| T |
4281472 |
ggaggtcaattcgtcaccatcatagtcatccttattaacaggtggatatcatatacaatcatatcacgagaaaggagctcggataaatgctcaaagcagc |
4281373 |
T |
|
| Q |
416 |
aaggaccgaggcggcatcattcaaaagaaaattaac |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
4281372 |
aaggaccgaggcggcatcattcaaaagaaaattaac |
4281337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 43 - 451
Target Start/End: Original strand, 31710142 - 31710551
Alignment:
| Q |
43 |
atatatatatgcactgtgctgcaattggcttatagtttt-ttggcaataatctagtatgataatggatattttggagacaataggttggaccttcatccc |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31710142 |
atatatatatgcactgtgctgcaattggcttatagtttttttggcaataatctagtatgataattgatattttggagacaataggttggaccttcatccc |
31710241 |
T |
|
| Q |
142 |
tgatttcattaatactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatgaactgaatttctcatctccatcagccc |
241 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | |
|
|
| T |
31710242 |
tgatttcattaatactacagcaagggtgttgtacttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagctc |
31710341 |
T |
|
| Q |
242 |
agttatcggtaaatgaagtggagtgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacggtggaggtcaattcgtcaccatcatagt |
341 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
31710342 |
ggttatcggtaaatgaagtggaatgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacagtggagctcaattcgtcaccatcatagt |
31710441 |
T |
|
| Q |
342 |
catccttcttaacaggcggatatcatatacaatcatatcacgagaaaggaacccatataaatgctcaaagcagcaaggaccgaggcggcatcattcaaaa |
441 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
31710442 |
catccttatgaacaggcggatatcatatacaatcatgtcacaagaaaggaacccggataaatgctcaaagcagcaaggatcgaagcggcatcattcaaaa |
31710541 |
T |
|
| Q |
442 |
gaaaattaac |
451 |
Q |
| |
|
|||||||||| |
|
|
| T |
31710542 |
gaaaattaac |
31710551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 14674485 - 14674717
Alignment:
| Q |
16 |
ttcatatctgcattggtttttcggtggatatatatatgcactgtgctgcaattggcttatagtttt-ttggcaataatctagtatgataatggatatttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||| |
|
|
| T |
14674485 |
ttcatatctgcattggtttttcggtggatatatatatgcactgtgctgcaattggcttatagtttttttggcaatagtctagtatgataattgatatttt |
14674584 |
T |
|
| Q |
115 |
ggagacaataggttggaccttcatccctgatttcattaatactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatg |
214 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14674585 |
ggagacaataggttggacattcatccctgatttcattaatactacagcaaggttgttgtacttcctaagtaattttcagggcctcaagattcaacaaaca |
14674684 |
T |
|
| Q |
215 |
aactgaatttctcatctccatcagcccagttat |
247 |
Q |
| |
|
|||| ||||||||| || ||||| ||| ||||| |
|
|
| T |
14674685 |
aactcaatttctcacctacatcaacccggttat |
14674717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 18974332 - 18974466
Alignment:
| Q |
16 |
ttcatatctgcattggtttttcggtggatatatatatgcactgtgctgcaattggcttatagtttttt-ggcaataatctagtatgataatggatatttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
18974332 |
ttcatatctgcattggtttttcggtggatatatatatgcacta----------ggcttatagtttttttggaaataatctagtatgataatggatatttt |
18974421 |
T |
|
| Q |
115 |
ggagacaataggttggaccttcatccctgatttcattaatactac |
159 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| |||| |||||| |
|
|
| T |
18974422 |
ggagacaataggttggactttcatccttgattctattactactac |
18974466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 20133967 - 20133873
Alignment:
| Q |
154 |
tactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatgaactgaatttctcatctccatcagcccagttatc |
248 |
Q |
| |
|
||||||| | ||||| |||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||| || ||||| ||| |||||| |
|
|
| T |
20133967 |
tactacagccagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc |
20133873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 31710091 - 31710127
Alignment:
| Q |
16 |
ttcatatctgcattggtttttcggtggatatatatat |
52 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31710091 |
ttcatatccgcattggtttttcggtggatatatatat |
31710127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 162 - 451
Target Start/End: Original strand, 17594765 - 17595054
Alignment:
| Q |
162 |
caagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatgaactgaatttctcatctccatcagcccagttatcggtaaatgaagtg |
261 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17594765 |
caagggtgttatacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctcatctccatcagcctggttatcggtaaatgaagtg |
17594864 |
T |
|
| Q |
262 |
gagtgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacggtggaggtcaattcgtcaccatcatagtcatccttcttaacaggcgga |
361 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
17594865 |
gaatgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacagtggagctcaattcgtcaccatcatagtcatccttgtgaacaggcgga |
17594964 |
T |
|
| Q |
362 |
tatcatatacaatcatatcacgagaaaggaacccatataaatgctcaaagcagcaaggaccgaggcggcatcattcaaaagaaaattaac |
451 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17594965 |
tatcatatacaatcatgtcacgagaaaggaacctgaataaatgctcaaagcagcaaggaccgaagcggcatcattcaaaagaaaattaac |
17595054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 19807371 - 19807219
Alignment:
| Q |
16 |
ttcatatctgcattggtttttcggtggatatatatatgcactgtgct--------gcaattggcttatagtttttt-ggcaataatctagtatgataatg |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| | | ||| | ||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
19807371 |
ttcatatatgcattggtttttcggtggatatatatatgcactaggatatatatatgcactaggcttatagtttttttggaaataatctagtatgataatg |
19807272 |
T |
|
| Q |
107 |
gatattttggagacaataggttggaccttcatccctgatttcattaatactac |
159 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |||| |||||| |
|
|
| T |
19807271 |
gatattttggagacaataggttggactttcatccttgattctattactactac |
19807219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 354 - 450
Target Start/End: Complemental strand, 26903054 - 26902963
Alignment:
| Q |
354 |
caggcggatatcatatacaatcatatcacgagaaaggaacccatataaatgctcaaagcagcaaggaccgaggcggcatcattcaaaagaaaattaa |
450 |
Q |
| |
|
|||||||||||||||||||||||| ||| || |||||| |||||||||||||||||| |||||||| |||||| |||||||||||||||||| |
|
|
| T |
26903054 |
caggcggatatcatatacaatcat-----gaggaatgaacccggataaatgctcaaagcagcgaggaccgaagcggcaccattcaaaagaaaattaa |
26902963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 12208029 - 12208063
Alignment:
| Q |
18 |
catatctgcattggtttttcggtggatatatatat |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
12208029 |
catatctgcattggtttttcggtggatatatatat |
12208063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 12208103 - 12208136
Alignment:
| Q |
352 |
aacaggcggatatcatatacaatcatatcacgag |
385 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
12208103 |
aacaggcggatatcatatacaatcatgtcacgag |
12208136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 86 - 344
Target Start/End: Original strand, 8165820 - 8166086
Alignment:
| Q |
86 |
caataatctagtatgataatggatattttggagacaataggttggaccttcatccctgatttcattaatactacaacaagggtgttgtacttcctacgta |
185 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| |||| ||| |||||| |||||| ||| |
|
|
| T |
8165820 |
caataatctagtatgataattgatattttggagacaataggttggaccttcattcttgatttcattaataccacaa---gggcgttgtatttcctaagta |
8165916 |
T |
|
| Q |
186 |
attttcagggcctcaagattcaacaaatgaactgaatttctcatctccatcagcccagttatcggtaaa-----------tgaagtggagtgtgtggctt |
274 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||| |||| || ||| |||||||||||| |||||||| |||| ||||| |
|
|
| T |
8165917 |
attttcagggcctcaagattcaacgaatgaactcaatttctcatttccaacaacccggttatcggtaaaggaagtggaatggaagtggaatgtgcggctt |
8166016 |
T |
|
| Q |
275 |
tctctcaacgccaacgacgtcacgaagatccgaccgacggtggaggtcaattcgtcaccatcatagtcat |
344 |
Q |
| |
|
||||||||| |||||||||||||||||||| || |||| |||||| ||||||||||||||||||||||| |
|
|
| T |
8166017 |
tctctcaacaccaacgacgtcacgaagatctgatcgacagtggagcccaattcgtcaccatcatagtcat |
8166086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 281 - 451
Target Start/End: Complemental strand, 17373 - 17203
Alignment:
| Q |
281 |
aacgccaacgacgtcacgaagatccgaccgacggtggaggtcaattcgtcaccatcatagtcatccttcttaacaggcggatatcatatacaatcatatc |
380 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| | ||||||||||||| |||||||||||| || |
|
|
| T |
17373 |
aacgccaacgacgtcacgaagatacgaccgacagtggagttcaattcgtcaccatcatagtcatccttatgaacaggcggatataatatacaatcatgtc |
17274 |
T |
|
| Q |
381 |
acgagaaaggaacccatataaatgctcaaagcagcaaggaccgaggcggcatcattcaaaagaaaattaac |
451 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
17273 |
acgagaaaggaacccggataaatgctcaaagcagcaaggaccgaagcggcgtcattcaaaagaaaattaac |
17203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 109 - 377
Target Start/End: Original strand, 11203450 - 11203709
Alignment:
| Q |
109 |
tattttggagacaataggttggaccttcatccctgatttcattaatactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaa |
208 |
Q |
| |
|
|||| |||||||||||| |||||| ||||||| ||||||||||| ||||||| ||| ||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11203450 |
tattctggagacaatagattggactttcatccttgatttcattactactacagcaaaggtattgtacttcctaagtaattttcagggcctcaagattcaa |
11203549 |
T |
|
| Q |
209 |
caaatgaactgaatttctcatctccatcagcccagttatcggtaaatgaagtggagtgtgtggctttctctcaacgccaacgacgtcacgaagatccgac |
308 |
Q |
| |
|
|||||||||| || ||||| || ||||| ||| |||||| || |||| | ||| ||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
11203550 |
caaatgaactcaacttctcccctacatcaacccggttatc-----at-cagtgaaatgtatggctttctctcaacgccaacgacgtc---aagatccaat |
11203640 |
T |
|
| Q |
309 |
cgacggtggaggtcaattcgtcaccatcatagtcatccttcttaacaggcggatatcatatacaatcat |
377 |
Q |
| |
|
| || | |||| |||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
11203641 |
caacagaggagctcaattcgtcaccatcatagtcttccttataaacaggcggatatcatatacaatcat |
11203709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 99 - 248
Target Start/End: Original strand, 12325739 - 12325891
Alignment:
| Q |
99 |
tgataatggatattttggagacaataggttggaccttcatccctgatt---tcattaatactacaacaagggtgttgtacttcctacgtaattttcaggg |
195 |
Q |
| |
|
||||||| ||||| |||||||||||| |||||| ||||||| ||||| | | || ||||||| ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
12325739 |
tgataattaatattctggagacaatagattggactttcatccttgattctattactactactacagcaagggtattgtacttcctaagtaattttcaggg |
12325838 |
T |
|
| Q |
196 |
cctcaagattcaacaaatgaactgaatttctcatctccatcagcccagttatc |
248 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| || ||||| ||| |||||| |
|
|
| T |
12325839 |
cctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatc |
12325891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 316 - 450
Target Start/End: Original strand, 12325893 - 12326022
Alignment:
| Q |
316 |
ggaggtcaattcgtcaccatcatagtcatccttcttaacaggcggatatcatatacaatcatatcacgagaaaggaacccatataaatgctcaaagcagc |
415 |
Q |
| |
|
|||| |||| ||||||||||||||||| ||||| | ||||||| |||||||||||||||||| ||| || |||||| |||||||||||||||||| |
|
|
| T |
12325893 |
ggagctcaaatcgtcaccatcatagtcctccttatgaacaggcagatatcatatacaatcat-----gaggaatgaacccggataaatgctcaaagcagc |
12325987 |
T |
|
| Q |
416 |
aaggaccgaggcggcatcattcaaaagaaaattaa |
450 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| |
|
|
| T |
12325988 |
gaggaccgaagcggcaccattcaaaagaaaattaa |
12326022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 12325692 - 12325724
Alignment:
| Q |
16 |
ttcatatctgcattggtttttcggtggatatat |
48 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
12325692 |
ttcatatctgcattggtttttcggtggatatat |
12325724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 5331542 - 5331406
Alignment:
| Q |
16 |
ttcatatctgcattggtttttcggtggatatatatatgcactgtgctgcaattggcttatagtttttt---ggcaataatctagtatgataatggatatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||| ||||||| |
|
|
| T |
5331542 |
ttcatatctgcattggtttttcggtggatatatatatgcacta----------ggcttatagtttttttttggaaataatctagtatgataagggatatt |
5331453 |
T |
|
| Q |
113 |
ttggagacaataggttggaccttcatccctgatttcattaatactac |
159 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||| |||||| |
|
|
| T |
5331452 |
ttggagacaataggttggactttcatccttgattctattactactac |
5331406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 248
Target Start/End: Original strand, 44358104 - 44358198
Alignment:
| Q |
154 |
tactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatgaactgaatttctcatctccatcagcccagttatc |
248 |
Q |
| |
|
||||||| | ||||| |||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||| || ||||| ||| |||||| |
|
|
| T |
44358104 |
tactacagccagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc |
44358198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 99 - 248
Target Start/End: Original strand, 47845 - 47997
Alignment:
| Q |
99 |
tgataatggatattttggagacaataggttggaccttcatccctgatt---tcattaatactacaacaagggtgttgtacttcctacgtaattttcaggg |
195 |
Q |
| |
|
||||||| ||||| |||||||||||| |||||| ||||||| ||||| | | || ||||||| |||| || |||||||||||| ||||||||||||| |
|
|
| T |
47845 |
tgataattaatattctggagacaatagattggactttcatccttgattctattactactactacagcaagagtattgtacttcctaagtaattttcaggg |
47944 |
T |
|
| Q |
196 |
cctcaagattcaacaaatgaactgaatttctcatctccatcagcccagttatc |
248 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| || ||||| ||| |||||| |
|
|
| T |
47945 |
cctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatc |
47997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 450
Target Start/End: Original strand, 20196589 - 20196641
Alignment:
| Q |
398 |
ataaatgctcaaagcagcaaggaccgaggcggcatcattcaaaagaaaattaa |
450 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
20196589 |
ataaatgctcaaagcagcgaggaccgaagcggcatcattcaaaagaaaattaa |
20196641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 383 - 343
Alignment:
| Q |
196 |
cctcaagattcaacaaatgaactgaatttctcatctccatc |
236 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
383 |
cctcaagattcaacaaacaaactcaatttctcatctccatc |
343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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