View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_106 (Length: 245)
Name: NF1435_high_106
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_106 |
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Alignment Details
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 6812143 - 6812072
Alignment:
| Q |
164 |
catatgaagaatatatgcctgcaaataactttaagtctttaaccaattctttagtcacacatttgtcctatg |
235 |
Q |
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| T |
6812143 |
catatgaagaatatatgcctgcaaataactttaagtctttaaccaattctttagtcacacatttgtcctatg |
6812072 |
T |
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Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 6812932 - 6812866
Alignment:
| Q |
15 |
atcatctacacttgtaagtaacatcatttttataaaattttctttcttctcaaccaggttttgtttt |
81 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6812932 |
atcatctacacttgtaagtaacatcatttttataaaattttctttcttctcaaccaggttttgtttt |
6812866 |
T |
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