View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_108 (Length: 244)
Name: NF1435_high_108
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_108 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 95 - 231
Target Start/End: Complemental strand, 10134969 - 10134832
Alignment:
| Q |
95 |
tccaacccatcattcttgtacaaattttaattcgtgacctgtcattaatttttcttccttcataaatttcacattgttgtttaaggttttgtgtt-tttg |
193 |
Q |
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| T |
10134969 |
tccaacccaacattcttgtacaaattttaattcgtgacctgtcattaatttttcttccttcataaatttcacattgttgtttaaggttttgtgttctttg |
10134870 |
T |
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| Q |
194 |
agagagagatgtgtcctttaaggttcatgttggtgttc |
231 |
Q |
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| T |
10134869 |
agagagagatgtgtcctttaaggttcatcttggtgttc |
10134832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 43008809 - 43008867
Alignment:
| Q |
170 |
gttgtttaaggttttgtgtttttgagagagagatgtgtcctttaaggttcatgttggtgtt |
230 |
Q |
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| T |
43008809 |
gttgtttagggttttgtgttcttgaga--gagatgtgtcctttaaggttcatcttagtgtt |
43008867 |
T |
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