View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_112 (Length: 240)
Name: NF1435_high_112
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_112 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6083506 - 6083267
Alignment:
| Q |
1 |
ctcttgaaaattggacttcatttcgaatatcaagttccttttgaagcactcgagcctcatacatcagagaagtattatccttctcaacagactctaatcc |
100 |
Q |
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| T |
6083506 |
ctcttgaaaattggacttcatttcgaatatcaagttccttttgaagcactcgagcctcatacatcagagaagtattatccttctcaacagactctaatcc |
6083407 |
T |
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| Q |
101 |
aatcatcaatgcattacgatccacgtctgcttgattcaattgtcttctcagatcatcaatcaaattgtctttcgcgataatagatttgttaagataagaa |
200 |
Q |
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| T |
6083406 |
aatcatcaatgcattacgatccacgtctgcttgattcaattgtcttctcagatcatcaatcaaattgtctttcgcgataatagatttgttaagataagaa |
6083307 |
T |
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| Q |
201 |
ttttcaatcacagttttagcaagccttttacttttctctg |
240 |
Q |
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| T |
6083306 |
ttttcaatcacagttttagcaagccttttacttttctctg |
6083267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 39107915 - 39108062
Alignment:
| Q |
16 |
cttcatttcgaatatcaagttccttttgaagcactcgagcctcatacatcagagaagtattatccttctcaacagactctaatccaatcatcaatgcatt |
115 |
Q |
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|||||||||| || || || ||||||| ||| ||||| ||||||| ||||||||| |||||| |||||| |||||||||| || ||||| |||| | |
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| T |
39107915 |
cttcatttcggatctccagctccttttcaagtactcggacctcatatgtcagagaagcattatctttctcagtggactctaatctaaccatcagtgcact |
39108014 |
T |
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| Q |
116 |
acgatccacgtctgcttgattcaattgtcttctcagatcatcaatcaa |
163 |
Q |
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| T |
39108015 |
atgatctgcctcagcttgagtcaattgtcttttcagatcctcaatcaa |
39108062 |
T |
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