View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1435_high_114 (Length: 239)

Name: NF1435_high_114
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1435_high_114
NF1435_high_114
[»] chr8 (3 HSPs)
chr8 (60-104)||(11900767-11900811)
chr8 (180-226)||(11900636-11900682)
chr8 (184-233)||(12926460-12926509)
[»] chr5 (1 HSPs)
chr5 (180-234)||(41539377-41539431)
[»] chr4 (2 HSPs)
chr4 (184-232)||(12585541-12585589)
chr4 (188-225)||(6202675-6202712)
[»] scaffold0119 (1 HSPs)
scaffold0119 (184-234)||(1102-1152)
[»] chr6 (1 HSPs)
chr6 (184-234)||(26669641-26669691)
[»] chr2 (2 HSPs)
chr2 (184-234)||(20942091-20942141)
chr2 (189-234)||(18089792-18089837)
[»] chr3 (1 HSPs)
chr3 (180-232)||(6054203-6054255)


Alignment Details
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 11900811 - 11900767
Alignment:
Q  60 gtattaatgagaaaggaaaccacacaaaatattattgaatttgta 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11900811 gtattaatgagaaaggaaaccacacaaaatattattgaatttgta 11900767  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 11900682 - 11900636
Alignment:
Q  180 caaatagtttagtgacttgaattcaccttttccaagatgaataagtg 226  Q
    |||||||||||||| || ||||||||||||| |||||||||||||||    
T  11900682 caaatagtttagtggctagaattcacctttttcaagatgaataagtg 11900636  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 12926460 - 12926509
Alignment:
Q  184 tagtttagtgacttgaattcaccttttccaagatgaataagtgaggtgtc 233  Q
    |||| ||||| || ||||| ||||||| ||||||||||||||||||||||    
T  12926460 tagtctagtggctagaatttacctttttcaagatgaataagtgaggtgtc 12926509  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 41539431 - 41539377
Alignment:
Q  180 caaatagtttagtgacttgaattcaccttttccaagatgaataagtgaggtgtct 234  Q
    |||||||| |||||||| ||||||||||||| |||||| |||||||| |||||||    
T  41539431 caaatagtctagtgactagaattcacctttttcaagattaataagtggggtgtct 41539377  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 12585541 - 12585589
Alignment:
Q  184 tagtttagtgacttgaattcaccttttccaagatgaataagtgaggtgt 232  Q
    |||| ||||| || ||||||||||||| |||||||||||||||||||||    
T  12585541 tagtctagtggctagaattcacctttttcaagatgaataagtgaggtgt 12585589  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 6202712 - 6202675
Alignment:
Q  188 ttagtgacttgaattcaccttttccaagatgaataagt 225  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  6202712 ttagtgactagaattcacctttttcaagatgaataagt 6202675  T

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Target: scaffold0119 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 1152 - 1102
Alignment:
Q  184 tagtttagtgacttgaattcaccttttccaagatgaataagtgaggtgtct 234  Q
    |||||||||| || ||||||||||||| |||| |||||||||| |||||||    
T  1152 tagtttagtggctagaattcacctttttcaaggtgaataagtggggtgtct 1102  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 26669641 - 26669691
Alignment:
Q  184 tagtttagtgacttgaattcaccttttccaagatgaataagtgaggtgtct 234  Q
    |||||||||| || ||||||||||||| |||| |||||||||| |||||||    
T  26669641 tagtttagtggctagaattcacctttttcaaggtgaataagtggggtgtct 26669691  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 20942091 - 20942141
Alignment:
Q  184 tagtttagtgacttgaattcaccttttccaagatgaataagtgaggtgtct 234  Q
    |||| |||||||| |||||||| |||| |||| ||||||||||||||||||    
T  20942091 tagtctagtgactagaattcacttttttcaaggtgaataagtgaggtgtct 20942141  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 18089837 - 18089792
Alignment:
Q  189 tagtgacttgaattcaccttttccaagatgaataagtgaggtgtct 234  Q
    |||||||| |||||||| |||| |||| ||||||||||||||||||    
T  18089837 tagtgactagaattcacgtttttcaaggtgaataagtgaggtgtct 18089792  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 6054203 - 6054255
Alignment:
Q  180 caaatagtttagtgacttgaattcaccttttccaagatgaataagtgaggtgt 232  Q
    |||||||| |||||  | ||||||||||||| |||| ||||||||||||||||    
T  6054203 caaatagtctagtggttagaattcacctttttcaaggtgaataagtgaggtgt 6054255  T

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