View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_119 (Length: 237)
Name: NF1435_high_119
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_119 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0263 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 6277879 - 6278096
Alignment:
| Q |
17 |
agggtgcatacgcaataaaactacataggtaccattgtgttccgggtagatttattagaataatatagtggtcatttgaacattaattaatggtgataga |
116 |
Q |
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| T |
6277879 |
agggtacatacacaataaaactacgtaggtatcattgtgttccgggtagatttattagaataatatagtggtcatttgaacattaattaatggtgataga |
6277978 |
T |
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| Q |
117 |
gttgttgagaatgaatgaactaacgatagcataagtaaataaaaagcaaatagatgataaattgcgagtaaaataataatttgattgattgtgtatgtat |
216 |
Q |
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| T |
6277979 |
gttgttgagaatgaataaactaacgatagcataagtaaataaaaagcaaata---gataaattgcgagtaaaataataatttgatcgattgtgtatgtat |
6278075 |
T |
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| Q |
217 |
aaatcaaaatttacaatttgt |
237 |
Q |
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| T |
6278076 |
aaatcaaaatttacaatttgt |
6278096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 6292035 - 6292127
Alignment:
| Q |
115 |
gagttgttgagaatgaatgaactaacgatagcataagtaaataaaaagcaaatagatgataaattgcgagtaaaataataatttgattgattgtgt |
210 |
Q |
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| T |
6292035 |
gagtagttgagaattaatgaagtaacgatatcataagta--taaaaggcaaaaggataa-aaattgcgagtaaaataatagtttggtttattgtgt |
6292127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 110303 - 110408
Alignment:
| Q |
123 |
gagaatgaatgaactaacgatagcataagtaaataaaaagcaaatagatgataaattgcgagtaaaataataatttgattgattgtgtatgtataaatca |
222 |
Q |
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| T |
110303 |
gagaattattgaactaaccatagcacaagtaaataaaaggcaaa---aagattaattgtgagtaaaataatagttagattgattatgaaagtctaaataa |
110399 |
T |
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| Q |
223 |
aaatttaca |
231 |
Q |
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| T |
110400 |
aaatttaca |
110408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 231
Target Start/End: Original strand, 20787 - 20897
Alignment:
| Q |
118 |
ttgttgagaatgaatgaactaacgatagcataagtaaataaaaagcaaatagatgataaattgcgagtaaaataataatttgattgattgtgtatgtata |
217 |
Q |
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| T |
20787 |
ttgtcgagaattaatgaactaaccatagcacaagtaaataaaaggcaaa---aaggttaattgtgagtaaaataatagttagattgattatgaaagtcta |
20883 |
T |
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| Q |
218 |
aatcaaaatttaca |
231 |
Q |
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| T |
20884 |
attaaaaatttaca |
20897 |
T |
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