View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1435_high_12 (Length: 503)

Name: NF1435_high_12
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1435_high_12
NF1435_high_12
[»] chr8 (17 HSPs)
chr8 (12-320)||(27049128-27049448)
chr8 (362-441)||(27049450-27049529)
chr8 (262-340)||(10120780-10120858)
chr8 (215-333)||(10114465-10114584)
chr8 (248-337)||(9956785-9956875)
chr8 (237-308)||(27028829-27028901)
chr8 (272-340)||(32840954-32841022)
chr8 (239-309)||(1930035-1930106)
chr8 (210-340)||(7514549-7514680)
chr8 (210-336)||(11376674-11376800)
chr8 (210-340)||(26771236-26771367)
chr8 (210-304)||(33714240-33714334)
chr8 (271-338)||(33808336-33808403)
chr8 (261-303)||(4281569-4281611)
chr8 (271-312)||(27492970-27493011)
chr8 (224-292)||(28769355-28769424)
chr8 (215-302)||(24558829-24558917)
[»] chr3 (18 HSPs)
chr3 (210-340)||(21367638-21367769)
chr3 (273-341)||(26878235-26878303)
chr3 (210-341)||(34610773-34610905)
chr3 (239-309)||(35394497-35394568)
chr3 (214-340)||(45264334-45264461)
chr3 (208-340)||(402510-402643)
chr3 (210-309)||(20170707-20170807)
chr3 (235-305)||(2719464-2719535)
chr3 (210-303)||(36783339-36783433)
chr3 (213-263)||(37689430-37689480)
chr3 (221-330)||(45541553-45541662)
chr3 (210-295)||(37788831-37788916)
chr3 (235-294)||(50600192-50600252)
chr3 (215-336)||(20880452-20880574)
chr3 (236-289)||(34254827-34254881)
chr3 (240-292)||(37273135-37273188)
chr3 (210-306)||(25447247-25447343)
chr3 (235-310)||(32582740-32582816)
[»] chr5 (29 HSPs)
chr5 (235-314)||(7984965-7985045)
chr5 (210-336)||(39105435-39105562)
chr5 (210-292)||(12425542-12425625)
chr5 (210-314)||(9202742-9202847)
chr5 (209-302)||(6587113-6587207)
chr5 (226-338)||(28776980-28777093)
chr5 (248-303)||(4014429-4014485)
chr5 (249-340)||(42100321-42100413)
chr5 (273-340)||(7808540-7808607)
chr5 (210-336)||(17258856-17258982)
chr5 (226-340)||(36639509-36639623)
chr5 (211-293)||(1619062-1619144)
chr5 (212-289)||(7319379-7319457)
chr5 (252-337)||(29925854-29925940)
chr5 (221-314)||(34160713-34160807)
chr5 (239-305)||(7319011-7319078)
chr5 (210-292)||(7674619-7674702)
chr5 (248-338)||(37611186-37611276)
chr5 (248-338)||(37787916-37788006)
chr5 (248-333)||(17368685-17368770)
chr5 (261-338)||(10639976-10640053)
chr5 (235-303)||(25461321-25461390)
chr5 (215-282)||(2563186-2563254)
chr5 (266-314)||(6096575-6096623)
chr5 (221-292)||(10272447-10272519)
chr5 (226-289)||(18637039-18637103)
chr5 (221-261)||(32408640-32408680)
chr5 (210-309)||(35446026-35446126)
chr5 (214-309)||(40119867-40119963)
[»] chr6 (12 HSPs)
chr6 (210-340)||(2735040-2735171)
chr6 (210-336)||(9093528-9093655)
chr6 (235-330)||(31624086-31624181)
chr6 (211-337)||(13907557-13907684)
chr6 (262-340)||(9912159-9912237)
chr6 (252-336)||(31813174-31813259)
chr6 (210-303)||(769110-769203)
chr6 (248-314)||(34430455-34430522)
chr6 (209-294)||(8364990-8365076)
chr6 (248-292)||(835265-835310)
chr6 (241-340)||(2454991-2455090)
chr6 (235-307)||(9109252-9109325)
[»] chr2 (31 HSPs)
chr2 (210-336)||(1625871-1625998)
chr2 (210-328)||(18066099-18066218)
chr2 (214-340)||(26626848-26626975)
chr2 (248-338)||(40682365-40682455)
chr2 (214-281)||(8017409-8017477)
chr2 (222-386)||(2142636-2142802)
chr2 (249-330)||(750680-750762)
chr2 (221-293)||(680485-680558)
chr2 (210-290)||(12464491-12464572)
chr2 (210-340)||(26143608-26143740)
chr2 (248-307)||(40279416-40279476)
chr2 (239-337)||(16451118-16451217)
chr2 (210-303)||(18962042-18962137)
chr2 (210-304)||(28039336-28039431)
chr2 (248-306)||(40279276-40279335)
chr2 (248-306)||(40279346-40279405)
chr2 (262-308)||(7928299-7928345)
chr2 (210-303)||(12313178-12313272)
chr2 (248-309)||(16398123-16398185)
chr2 (250-292)||(43868289-43868331)
chr2 (248-337)||(45229520-45229610)
chr2 (248-300)||(10646297-10646350)
chr2 (248-292)||(15977994-15978039)
chr2 (238-290)||(33319830-33319883)
chr2 (248-304)||(35379020-35379077)
chr2 (216-308)||(36043881-36043974)
chr2 (210-306)||(40279168-40279265)
chr2 (210-309)||(3611197-3611297)
chr2 (238-309)||(9174814-9174886)
chr2 (265-309)||(21788341-21788385)
chr2 (264-304)||(43511111-43511151)
[»] chr7 (17 HSPs)
chr7 (210-340)||(20526417-20526548)
chr7 (210-331)||(39967891-39968013)
chr7 (239-309)||(36517579-36517650)
chr7 (221-283)||(39393603-39393665)
chr7 (213-385)||(33678754-33678927)
chr7 (210-301)||(40688993-40689085)
chr7 (210-340)||(39907774-39907903)
chr7 (210-292)||(44821930-44822013)
chr7 (227-340)||(20526897-20527011)
chr7 (238-292)||(25596032-25596087)
chr7 (248-330)||(34035926-34036009)
chr7 (214-340)||(17248530-17248654)
chr7 (248-340)||(44989645-44989739)
chr7 (214-283)||(47177611-47177681)
chr7 (210-282)||(12110331-12110404)
chr7 (210-294)||(22283758-22283843)
chr7 (226-290)||(43648227-43648292)
[»] chr4 (17 HSPs)
chr4 (210-337)||(1706593-1706721)
chr4 (210-340)||(22661980-22662112)
chr4 (210-340)||(22666459-22666591)
chr4 (210-292)||(28300315-28300398)
chr4 (210-292)||(51630082-51630165)
chr4 (237-314)||(55414414-55414492)
chr4 (210-306)||(3155574-3155671)
chr4 (248-331)||(17822842-17822926)
chr4 (237-336)||(24169261-24169361)
chr4 (213-308)||(40174537-40174633)
chr4 (271-338)||(48719362-48719428)
chr4 (248-293)||(825505-825551)
chr4 (226-303)||(35571636-35571714)
chr4 (235-292)||(43932431-43932489)
chr4 (209-257)||(24091433-24091481)
chr4 (278-330)||(49939929-49939981)
chr4 (208-291)||(54392836-54392920)
[»] chr1 (25 HSPs)
chr1 (209-340)||(4576775-4576906)
chr1 (224-307)||(45975675-45975759)
chr1 (210-336)||(10199381-10199507)
chr1 (224-337)||(7136970-7137083)
chr1 (210-301)||(9656621-9656713)
chr1 (272-340)||(11941296-11941364)
chr1 (210-309)||(24915050-24915150)
chr1 (248-307)||(51695496-51695556)
chr1 (210-308)||(27820337-27820436)
chr1 (210-339)||(3887601-3887731)
chr1 (248-340)||(7941615-7941708)
chr1 (210-341)||(39976177-39976312)
chr1 (210-301)||(34290207-34290299)
chr1 (225-299)||(35179125-35179200)
chr1 (262-309)||(38503464-38503511)
chr1 (271-338)||(47498809-47498876)
chr1 (238-303)||(10744300-10744366)
chr1 (210-303)||(31517745-31517839)
chr1 (221-275)||(31918235-31918289)
chr1 (210-283)||(49888738-49888812)
chr1 (210-294)||(7218088-7218173)
chr1 (235-303)||(14629971-14630040)
chr1 (238-294)||(32113657-32113714)
chr1 (248-305)||(38882915-38882972)
chr1 (210-262)||(48830123-48830175)
[»] scaffold0018 (1 HSPs)
scaffold0018 (210-291)||(178342-178424)
[»] scaffold0098 (1 HSPs)
scaffold0098 (246-283)||(50852-50889)
[»] scaffold0024 (1 HSPs)
scaffold0024 (239-282)||(21311-21355)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-144; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 12 - 320
Target Start/End: Original strand, 27049128 - 27049448
Alignment:
Q  12 gagatgaaaaggtcagagttgaacacttctaatctatacatataagagtattttaggaacatccatacaaaatctatatgcaaattgaacacattacata 111  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27049128 gagatgaaaaagtcagagttgaacacgtctaatctatacatataagagtattttaggaacatccatacaaaatctatatgcaaattgaacacattacata 27049227  T
Q  112 cactatcaactttttagtacaaaaaagatttagactctgtttggataaacatctaacttaaagcttatagtacaagcacttgcgtataatttattt---- 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||        
T  27049228 cactatcaactttttagtacaaaaaagatttagactctgtttggataaacatctaatttaaagcttatagtacaagcacttacgtataatttatttctat 27049327  T
Q  208 --------ataaataaagttcaattattttcgtacaagctataaacttttttcataagctatttggagaaattatgaaaataagatgaaaacagcatatg 299  Q
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27049328 agcaaaagataaataaagttcaattattttcgtataagctataaacttttttcataagctatttggagaaattatgaaaataagatgaaaacagcatatg 27049427  T
Q  300 aacaatgtcacaagccaattt 320  Q
    |||||||||||||||||||||    
T  27049428 aacaatgtcacaagccaattt 27049448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 362 - 441
Target Start/End: Original strand, 27049450 - 27049529
Alignment:
Q  362 gataaatttaaataagtcaatccaatcacgccttcctaaattgaaaaattaatcacatgtcgtgtccgacatccacacat 441  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  27049450 gataagtttaaataagtcaatccaatcacgccttcctagattgaaaaattaatcacatgtcatgtccgacatccacacat 27049529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 262 - 340
Target Start/End: Original strand, 10120780 - 10120858
Alignment:
Q  262 ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaacagt 340  Q
    |||||||| ||||||||||||| ||||||||||||||||  ||||||| ||||   |||||||||||||||||||||||    
T  10120780 ttggagaacttatgaaaataagctgaaaacagcatatgataaatgtcataagctgttttcataagttctctcaaacagt 10120858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 333
Target Start/End: Original strand, 10114465 - 10114584
Alignment:
Q  215 aagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaag 313  Q
    ||||| |||| |||| ||| ||||||||| || ||||||| |||||| ||||||||  |||||||||||| ||||||||||||||||  ||||| | |||    
T  10114465 aagttgaattgttttggtataagctataagctgttttcattagctatattggagaacatatgaaaataagctgaaaacagcatatgataaatgttataag 10114564  T
Q  314 ccaatttcataagttctctc 333  Q
        ||||||||||||||||    
T  10114565 ttgttttcataagttctctc 10114584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 248 - 337
Target Start/End: Complemental strand, 9956875 - 9956785
Alignment:
Q  248 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaac 337  Q
    ||||||||| |||| |||||||| ||||||||||||| |||||||  | ||||||||||| || || | | ||||||||||||||||||||    
T  9956875 ttttcataatctatcttggagaacttatgaaaataagctgaaaactacttatgaacaatgccataaactattttcataagttctctcaaac 9956785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 27028829 - 27028901
Alignment:
Q  237 gctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    ||||||| || |||||||||||||| |||||||  ||||||||||||| |||||| ||| |||||| ||||||    
T  27028829 gctataagctgttttcataagctatcttggagagcttatgaaaataagctgaaaatagcttatgaaaaatgtc 27028901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 340
Target Start/End: Complemental strand, 32841022 - 32840954
Alignment:
Q  272 tatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaacagt 340  Q
    |||||||||||| |||||||| | |||||||||||||| |||    |||||||||||||| ||||||||    
T  32841022 tatgaaaataagctgaaaacaacttatgaacaatgtcataagttgttttcataagttctcccaaacagt 32840954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 309
Target Start/End: Original strand, 1930035 - 1930106
Alignment:
Q  239 tataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtca 309  Q
    ||||| || |||||||||||||| |||| ||  || |||||||||| |||||||||| ||||||||||||||    
T  1930035 tataagctgttttcataagctatcttggtgaccttgtgaaaataagctgaaaacagcttatgaacaatgtca 1930106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 340
Target Start/End: Original strand, 7514549 - 7514680
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagcta-tttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||||| |||||||| ||||| || |||||| || || ||||||||||||| |||| |||| |  ||||||| || || ||||||| ||||||||||||     
T  7514549 aaataatgttcaattgttttcatataagctacaagctgttttcataagctattttgcagaactagtgaaaattagttggaaacagcttatgaacaatgtt 7514648  T
Q  309 acaagccaatttcataagttctctcaaacagt 340  Q
    |  |||   ||||| |||||||| ||||||||    
T  7514649 atcagctgctttcacaagttctcccaaacagt 7514680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 336
Target Start/End: Original strand, 11376674 - 11376800
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatttg-gagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||||||||  |||||||||  || |||||||||  |  |||| ||||||||||  |||||  |||||||||||| ||||||||  |||| |||| ||||    
T  11376674 aaataaagtctaattattttgatataagctataagatgctttcttaagctattttagagaatctatgaaaataagctgaaaacaagatattaaca-tgtc 11376772  T
Q  309 acaagccaatttcataagttctctcaaa 336  Q
    |||||| | |||||||||||||| ||||    
T  11376773 acaagctattttcataagttctcccaaa 11376800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 340
Target Start/End: Original strand, 26771236 - 26771367
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    ||||||| || |||| |||| ||| | ||||||| ||||||| ||||| ||| || ||||| ||||||||||||| ||||||  || | |||| | ||||    
T  26771236 aaataaacttaaattgtttttgtatatgctataagctttttttataagatatattagagaacttatgaaaataagttgaaaaaggcttttgaaaattgtc 26771335  T
Q  309 acaagccaatttcataagttctctcaaacagt 340  Q
    | ||||   |||||||||||||| ||||||||    
T  26771336 ataagctgttttcataagttctcccaaacagt 26771367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 304
Target Start/End: Complemental strand, 33714334 - 33714240
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaa 304  Q
    |||||||||  || |||||| |||||| |||||| || |||||||||||||| | |||||  |||| |||||||| |||||||||| |||||||||    
T  33714334 aaataaagtcaaactatttt-gtacaatctataagctattttcataagctatctgggagagcttataaaaataagctgaaaacagcttatgaacaa 33714240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 338
Target Start/End: Original strand, 33808336 - 33808403
Alignment:
Q  271 ttatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaaca 338  Q
    ||||||||||||| | |||||| | |||||||||| ||| |||| | |||||||||||||| ||||||    
T  33808336 ttatgaaaataagctaaaaacaacttatgaacaatatcataagctattttcataagttctcccaaaca 33808403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 4281569 - 4281611
Alignment:
Q  261 tttggagaaattatgaaaataagatgaaaacagcatatgaaca 303  Q
    ||||||||| |||||||||||||||||||||| | ||||||||    
T  4281569 tttggagaatttatgaaaataagatgaaaacaacttatgaaca 4281611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 27492970 - 27493011
Alignment:
Q  271 ttatgaaaataagatgaaaacagcatatgaacaatgtcacaa 312  Q
    ||||||||||||| |||||| ||| |||||||||||||||||    
T  27492970 ttatgaaaataagttgaaaatagcttatgaacaatgtcacaa 27493011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 28769424 - 28769355
Alignment:
Q  224 tattttcgtacaagctataaacttttttcataagcta-tttggagaaattatgaaaataagatgaaaaca 292  Q
    ||||||| || ||||||||| || ||||||||||||| ||||||||  ||||| ||||||| ||||||||    
T  28769424 tattttcttataagctataagctgttttcataagctattttggagagtttatggaaataagctgaaaaca 28769355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 302
Target Start/End: Original strand, 24558829 - 24558917
Alignment:
Q  215 aagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaac 302  Q
    ||||| ||||||||||||| |||||||||  | |||||||||||||| |||||||  | ||| ||||||| |||| | ||| |||||||    
T  24558829 aagttaaattattttcgtataagctataagttgttttcataagctatcttggagacttaatgtaaataagttgaacatagcttatgaac 24558917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 210 - 340
Target Start/End: Original strand, 21367638 - 21367769
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||||||||| |||| |||||||| ||  |||||  | |||||||||||||| |||||||| ||||||||||||| |||||||||| | |||||||||||    
T  21367638 aaataaagttaaattgttttcgtataatgtataagttgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttgtgaacaatgtc 21367737  T
Q  309 acaagccaatttcataagttctctcaaacagt 340  Q
    | ||||   |||||||||||||| ||||||||    
T  21367738 ataagctgttttcataagttctcccaaacagt 21367769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 273 - 341
Target Start/End: Original strand, 26878235 - 26878303
Alignment:
Q  273 atgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaacagtt 341  Q
    ||||||||||| |||||||||  |||||||||||||| |||| | ||||| ||||||||||||||||||    
T  26878235 atgaaaataagctgaaaacagtttatgaacaatgtcataagctattttcacaagttctctcaaacagtt 26878303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 341
Target Start/End: Complemental strand, 34610905 - 34610773
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||| ||||| ||||||||| ||||||| |||||  |  ||||||||||||| |||| ||| |||||||||| || |||||||  | |||||||||||||    
T  34610905 aaatgaagttaaattatttttgtacaagttataagttgctttcataagctatcttggcgaacttatgaaaatcagctgaaaaccacttatgaacaatgtc 34610806  T
Q  309 acaagccaatttcataagttctctcaaacagtt 341  Q
    | ||||   |||||||||||||| |||| ||||    
T  34610805 ataagcagttttcataagttctcccaaatagtt 34610773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 309
Target Start/End: Complemental strand, 35394568 - 35394497
Alignment:
Q  239 tataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtca 309  Q
    |||| ||| |||||||||||||| ||| |||| ||||||||||||| |||||||||| ||||||||||||||    
T  35394568 tatacactgttttcataagctatcttgaagaatttatgaaaataagttgaaaacagcttatgaacaatgtca 35394497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 340
Target Start/End: Complemental strand, 45264461 - 45264334
Alignment:
Q  214 aaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaa 312  Q
    |||||| |||| ||||| |||||||||||| || |||||||||||| | ||||| || |  |||||||||| |||||||||| ||||||||||| |  ||    
T  45264461 aaagttaaattgttttcttacaagctataagctattttcataagctctcttggaaaattggtgaaaataaggtgaaaacagcttatgaacaatgccgtaa 45264362  T
Q  313 gccaatttcataagttctctcaaacagt 340  Q
    |    |||||||||||||||||| ||||    
T  45264361 gttgttttcataagttctctcaaccagt 45264334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 340
Target Start/End: Complemental strand, 402643 - 402510
Alignment:
Q  208 ataaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatg 306  Q
    |||| |||| || |||| |||||||| ||| ||||| || |||| |||| |||| ||| |||| || ||||| |||| |||||||||| |||||||||||    
T  402643 ataattaaatttaaattgttttcgtataagttataagctgtttttataatctatcttgaagaacttgtgaaattaagctgaaaacagcttatgaacaatg 402544  T
Q  307 tcacaagccaatttcataagttctctcaaacagt 340  Q
    ||| ||||   ||||||| |||||| ||||||||    
T  402543 tcataagctgttttcatacgttctcccaaacagt 402510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 309
Target Start/End: Complemental strand, 20170807 - 20170707
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    ||||||||||||||| |||||||| |||||||||||| ||||| |||||||| ||| |||  ||||| ||||||| | |||||| | | | |||||||||    
T  20170807 aaataaagttcaattgttttcgtaaaagctataaactgttttcctaagctatcttgtagagcttatgcaaataagctaaaaacaacttttaaacaatgtc 20170708  T
Q  309 a 309  Q
    |    
T  20170707 a 20170707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 2719464 - 2719535
Alignment:
Q  235 aagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaat 305  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||||| ||| |||| | |||| |||||    
T  2719464 aagctataaactgttttcataagctatcttggagaacttatgaaaataagctgagaacaacttatggacaat 2719535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 303
Target Start/End: Complemental strand, 36783433 - 36783339
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaaca 303  Q
    |||||||||  |||| ||||| || || |||| | || |||||||||||||| |||||| ||||||||| ||||| |||||||||| ||||||||    
T  36783433 aaataaagtaaaattgttttcatataaactattagctgttttcataagctatattggagcaattatgaatataagctgaaaacagcttatgaaca 36783339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 37689480 - 37689430
Alignment:
Q  213 taaagttcaattattttcgtacaagctataaacttttttcataagctattt 263  Q
    ||||||| |||||||||| || |||||||||||| ||||||||||||||||    
T  37689480 taaagttaaattattttcatataagctataaactattttcataagctattt 37689430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 330
Target Start/End: Original strand, 45541553 - 45541662
Alignment:
Q  221 aattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatt 319  Q
    ||||||||||||| ||||||||   | |||||||||||||| ||||| || |||||| |||||  |||||||||| ||||||| |||||| ||||   ||    
T  45541553 aattattttcgtataagctatagtttattttcataagctatcttggataacttatgagaataacctgaaaacagcttatgaac-atgtcataagctgttt 45541651  T
Q  320 tcataagttct 330  Q
    |||||||||||    
T  45541652 tcataagttct 45541662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 295
Target Start/End: Original strand, 37788831 - 37788916
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatttggagaaattatgaaaataagatgaaaacagca 295  Q
    ||||||||| |||||||||||||| || ||||||  | ||||||||||||||||| |||  ||||||| || || | |||||||||    
T  37788831 aaataaagtccaattattttcgtataatctataagttgttttcataagctatttgaagagtttatgaacatcagcttaaaacagca 37788916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 50600252 - 50600192
Alignment:
Q  235 aagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagc 294  Q
    ||||||||| || ||||||| |||||| |||||||| ||||||||||||| ||||||||||    
T  50600252 aagctataagctgttttcatcagctatattggagaacttatgaaaataagctgaaaacagc 50600192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 336
Target Start/End: Original strand, 20880452 - 20880574
Alignment:
Q  215 aagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaag 313  Q
    ||||| |||| |||| ||| | |||||||||| |||| | ||||||| |||||||| ||||||||||||| | |||| ||| |||||| | ||||| |||    
T  20880452 aagttaaattgtttttgtatatgctataaactgtttttaaaagctatattggagaacttatgaaaataagctcaaaaaagcttatgaaaattgtcataag 20880551  T
Q  314 ccaatttcataagttctctcaaa 336  Q
    |   ||||||| |||||| ||||    
T  20880552 ctgttttcataggttctcccaaa 20880574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 34254881 - 34254827
Alignment:
Q  236 agctataaacttttttcataagctatt-tggagaaattatgaaaataagatgaaa 289  Q
    ||||||||||| ||||||||||||||| ||||||| ||||| ||||||| |||||    
T  34254881 agctataaactattttcataagctattctggagaacttatgtaaataagctgaaa 34254827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 37273135 - 37273188
Alignment:
Q  240 ataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaaca 292  Q
    ||||||| |||||||||||||| |||||||| ||||| ||||||| ||||||||    
T  37273135 ataaactgttttcataagctatcttggagaacttatggaaataagttgaaaaca 37273188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 306
Target Start/End: Complemental strand, 25447343 - 25447247
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatttggagaaattatgaaaataagatgaaaacagcatatgaacaatg 306  Q
    ||||||| || |||| |||| ||| |||||||||||| |||||||||||||| | ||    |||||| || ||| |||||||||| | |||||||||    
T  25447343 aaataaacttaaattgtttttgtataagctataaactgttttcataagctatcttgatttcttatgagaaaaagctgaaaacagcttgtgaacaatg 25447247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 32582740 - 32582816
Alignment:
Q  235 aagctataaacttttttcataagctattt-ggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcac 310  Q
    |||||| || || |||||||||||||||| |||||| ||||| ||||||| |||||| | | | |||||||||||||    
T  32582740 aagctacaagctgttttcataagctattttggagaacttatggaaataagttgaaaaaatcttttgaacaatgtcac 32582816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 235 - 314
Target Start/End: Original strand, 7984965 - 7985045
Alignment:
Q  235 aagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagc 314  Q
    ||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||||| ||||||||| |||||||||    
T  7984965 aagctataagcttttttcataagctatcttggagaatttatgaaaataagctgaaaacagcttatgaacaacgtcacaagc 7985045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 210 - 336
Target Start/End: Original strand, 39105435 - 39105562
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||| ||||| |||| |||||||| ||||||||| || |||||||||||||| |||||||| ||||||||||||| | |||| ||| |||||||||||||    
T  39105435 aaatgaagttaaattgttttcgtataagctataatctgttttcataagctatcttggagaacttatgaaaataagctaaaaatagcttatgaacaatgtc 39105534  T
Q  309 acaagccaatttcataagttctctcaaa 336  Q
    | ||||   |||||||| ||||| ||||    
T  39105535 ataagctgttttcataaattctcccaaa 39105562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 12425542 - 12425625
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaaca 292  Q
    |||||||||| |||| |||||||| ||||||||| || |||||| ||||||| |||||||| ||||||||||||| ||||||||    
T  12425542 aaataaagttaaattgttttcgtataagctataagctgttttcacaagctatcttggagaacttatgaaaataagttgaaaaca 12425625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 314
Target Start/End: Complemental strand, 9202847 - 9202742
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||||||||| |||| ||||| || |||| |||| || |||||||||| ||| ||| |||| ||||||||||||| || ||||||| |||||||||||||    
T  9202847 aaataaagttaaattgttttcatataagcaataagctgttttcataagttatcttgaagaacttatgaaaataagctggaaacagcttatgaacaatgtc 9202748  T
Q  309 acaagc 314  Q
    | ||||    
T  9202747 ataagc 9202742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 209 - 302
Target Start/End: Complemental strand, 6587207 - 6587113
Alignment:
Q  209 taaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaac 302  Q
    |||||||| ||||||| |||||||| |||||||||  | ||||||||||||||  ||||||| || |||||||||| || ||||||| |||||||    
T  6587207 taaataaacttcaattgttttcgtataagctataagttgttttcataagctatagtggagaacttgtgaaaataagctgtaaacagcttatgaac 6587113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 338
Target Start/End: Original strand, 28776980 - 28777093
Alignment:
Q  226 ttttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcata 324  Q
    |||||||| | ||||||| || |||||||||||||| |||||||| | ||||||||||||| |||| ||  | |||||||||||| || | | ||| |||    
T  28776980 ttttcgtataggctataagctgttttcataagctatcttggagaactaatgaaaataagataaaaatagtttttgaacaatgtcataaactatttttata 28777079  T
Q  325 agttctctcaaaca 338  Q
    ||||||| ||||||    
T  28777080 agttctcacaaaca 28777093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 4014485 - 4014429
Alignment:
Q  248 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaaca 303  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||||| ||||||||    
T  4014485 ttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttatgaaca 4014429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 340
Target Start/End: Original strand, 42100321 - 42100413
Alignment:
Q  249 tttcataagctatttg-gagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaacagt 340  Q
    |||| ||||||||||  ||||| |||||||||||||||||||||| | | ||||| |||||| |||| | ||||| ||||||||||| |||||    
T  42100321 tttcgtaagctatttttgagaacttatgaaaataagatgaaaacaccttttgaactatgtcataagctattttcacaagttctctcacacagt 42100413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 7808540 - 7808607
Alignment:
Q  273 atgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaacagt 340  Q
    ||||||||||| |||||||||| |||||||||||| | |||| | ||||||||| |||| ||||||||    
T  7808540 atgaaaataagctgaaaacagcttatgaacaatgttataagctattttcataagctctcccaaacagt 7808607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 336
Target Start/End: Complemental strand, 17258982 - 17258856
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatt-tggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||||||||  || ||||||||||||| | |||| || ||||||||| ||||  || |||  ||||||||||||| |||||||||| ||||||| |||||    
T  17258982 aaataaagtcaaactattttcgtacaatcaataagctgttttcataaactatcctgaagagcttatgaaaataagctgaaaacagcttatgaac-atgtc 17258884  T
Q  309 acaagccaatttcataagttctctcaaa 336  Q
    | |||| | ||||||| |||||| ||||    
T  17258883 ataagctattttcataggttctcccaaa 17258856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 340
Target Start/End: Original strand, 36639509 - 36639623
Alignment:
Q  226 ttttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcata 324  Q
    ||||| |||||| |||| ||| |||||||||||||| ||| |||  |||||||||||||| ||||||| | |||| || | |||| |||| | |||| ||    
T  36639509 ttttcatacaagttatagactgttttcataagctatcttgaagagcttatgaaaataagaggaaaacaacttatggac-acgtcataagcaattttcgta 36639607  T
Q  325 agttctctcaaacagt 340  Q
    ||||||||||||||||    
T  36639608 agttctctcaaacagt 36639623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 1619062 - 1619144
Alignment:
Q  211 aataaagttcaattattttcgtacaagctataaacttttttcataagctatttggagaaattatgaaaataagatgaaaacag 293  Q
    ||||||||| |||| ||| |||| ||||||||| || ||||||||||| |||||||||   ||||||||| || |||||||||    
T  1619062 aataaagttaaattctttccgtataagctataagctgttttcataagccatttggagagcatatgaaaatcagctgaaaacag 1619144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 289
Target Start/End: Original strand, 7319379 - 7319457
Alignment:
Q  212 ataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaa 289  Q
    |||||||| |||| ||||| || |||||||||||| ||||| |||||||| |||||||| |||| |||||||| |||||    
T  7319379 ataaagttaaattgttttcatataagctataaactgttttcgtaagctatcttggagaacttataaaaataagctgaaa 7319457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 337
Target Start/End: Original strand, 29925854 - 29925940
Alignment:
Q  252 cataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaac 337  Q
    |||||||||| |||||||| ||||||||||||| |||||| | || ||||||| ||||| ||||   |||||||||||||| |||||    
T  29925854 cataagctatattggagaacttatgaaaataagttgaaaaaaacacatgaacattgtcataagctgttttcataagttctcccaaac 29925940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 314
Target Start/End: Original strand, 34160713 - 34160807
Alignment:
Q  221 aattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagc 314  Q
    |||| |||||||| ||  ||||| || ||||||| || ||| |||||||| ||||||||||||| |||||||||  |||||||| ||||||||||    
T  34160713 aattcttttcgtaaaatttataagctattttcattagatatcttggagaacttatgaaaataagctgaaaacagtttatgaacagtgtcacaagc 34160807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 7319078 - 7319011
Alignment:
Q  239 tataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaat 305  Q
    |||||||| |||||||||||||| |||||||| ||||||||||||| ||| |||| | |||| |||||    
T  7319078 tataaactgttttcataagctatcttggagaacttatgaaaataagctgagaacaacttatggacaat 7319011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 7674619 - 7674702
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaaca 292  Q
    ||||||| || |||| ||||| || |||| ||||| | |||||||||||||| |||||||| || |||||||||| ||||||||    
T  7674619 aaataaatttaaattgttttcttataagccataaaatgttttcataagctatcttggagaatttgtgaaaataagctgaaaaca 7674702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 338
Target Start/End: Complemental strand, 37611276 - 37611186
Alignment:
Q  248 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaaca 338  Q
    |||||||||||||| |||||||  ||||| ||||||  |||||||||| |||||||| |||||||||    ||||||||| |||||||||||    
T  37611276 ttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaaca-tgtcacaagttgttttcataagctctctcaaaca 37611186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 338
Target Start/End: Complemental strand, 37788006 - 37787916
Alignment:
Q  248 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaaca 338  Q
    |||||||||||||| |||||||  ||||| ||||||  |||||||||| |||||||| |||||||||    ||||||||| |||||||||||    
T  37788006 ttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaaca-tgtcacaagttgttttcataagctctctcaaaca 37787916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 333
Target Start/End: Original strand, 17368685 - 17368770
Alignment:
Q  248 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctc 333  Q
    |||||||||||||| |||||||  ||||| ||||||| ||||||| |||||||||| |||||| |||    ||||||||||||||||    
T  17368685 ttttcataagctatcttggagaggttatggaaataagctgaaaactgcatatgaac-atgtcataagttgttttcataagttctctc 17368770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 338
Target Start/End: Original strand, 10639976 - 10640053
Alignment:
Q  261 tttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaaca 338  Q
    ||||||||| ||||||||||||| |  ||| ||| |||||| ||||||| ||||   |||||||||||||| ||||||    
T  10639976 tttggagaacttatgaaaataagctagaaaaagcttatgaaaaatgtcataagctgttttcataagttctcccaaaca 10640053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 25461390 - 25461321
Alignment:
Q  235 aagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaaca 303  Q
    |||||||||||| ||||||||| |||| |||| | | ||||||||||||| ||||||||||  |||||||    
T  25461390 aagctataaactgttttcataacctatcttggcgtatttatgaaaataagctgaaaacagctaatgaaca 25461321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 2563186 - 2563254
Alignment:
Q  215 aagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataa 282  Q
    |||||||||| |||| ||| |||||||||||| |||||| ||||||| |||||||   |||||||||||    
T  2563186 aagttcaattgtttttgtataagctataaactattttcacaagctatcttggagagtctatgaaaataa 2563254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 6096575 - 6096623
Alignment:
Q  266 agaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagc 314  Q
    |||| |||||||||| || ||| |||||| |||||||||||||||||||    
T  6096575 agaatttatgaaaatgagctgagaacagcttatgaacaatgtcacaagc 6096623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 292
Target Start/End: Complemental strand, 10272519 - 10272447
Alignment:
Q  221 aattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaaca 292  Q
    |||| |||||||| |||||||||  | ||||||||||| || |||||||  ||||||||||||| ||||||||    
T  10272519 aattgttttcgtataagctataagttgttttcataagccatcttggagagtttatgaaaataagctgaaaaca 10272447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 18637103 - 18637039
Alignment:
Q  226 ttttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaa 289  Q
    |||||||| ||||||||| || ||||||| |||||| ||| ||| |||||||||||||| |||||    
T  18637103 ttttcgtataagctataagctattttcattagctatcttgaagatattatgaaaataagctgaaa 18637039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 32408680 - 32408640
Alignment:
Q  221 aattattttcgtacaagctataaacttttttcataagctat 261  Q
    |||||||||| || |||||||||||| ||||||||||||||    
T  32408680 aattattttcatataagctataaactattttcataagctat 32408640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 309
Target Start/End: Original strand, 35446026 - 35446126
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatt-tggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||||||||| |||| |||| ||| | ||||||| || || ||||||||  || ||||||| ||||||||||||| |||||| ||| || ||| ||||||    
T  35446026 aaataaagttaaattgtttttgtatacgctataacctcttctcataagcatttgtggagaacttatgaaaataagctgaaaaaagcttacgaaaaatgtc 35446125  T
Q  309 a 309  Q
    |    
T  35446126 a 35446126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 309
Target Start/End: Complemental strand, 40119963 - 40119867
Alignment:
Q  214 aaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtca 309  Q
    |||||| |||||||| |||| ||||||||| || ||||||||||| || ||||| || || |||||||||  | | |||||| | ||||||||||||    
T  40119963 aaagttgaattatttccgtataagctataacctgttttcataagcgatcttggataacttgtgaaaataatctaagaacagcttgtgaacaatgtca 40119867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 210 - 340
Target Start/End: Original strand, 2735040 - 2735171
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||||||||| ||||||||| ||| || |||||| || ||||||||||| || ||| | || |||||||||||||  ||||||||| |||||| ||||||    
T  2735040 aaataaagttaaattatttttgtataatctataagctgttttcataagcaatcttgaacaacttatgaaaataagccgaaaacagcttatgaaaaatgtc 2735139  T
Q  309 acaagccaatttcataagttctctcaaacagt 340  Q
    | |||||  ||||||||||| |||||||||||    
T  2735140 ataagccgttttcataagttatctcaaacagt 2735171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 210 - 336
Target Start/End: Complemental strand, 9093655 - 9093528
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||||||||| |||| |||||||| ||||||||| || |||||||||||| | || ||||| ||| ||||||||| |||||||||  ||| |||||||||    
T  9093655 aaataaagttaaattgttttcgtataagctataagctgttttcataagctgtcttagagaacttaagaaaataagctgaaaacaggttattaacaatgtc 9093556  T
Q  309 acaagccaatttcataagttctctcaaa 336  Q
    | |||| | ||||||||| |||| ||||    
T  9093555 ataagctattttcataagctctcacaaa 9093528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 235 - 330
Target Start/End: Original strand, 31624086 - 31624181
Alignment:
Q  235 aagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttct 330  Q
    ||||||||| || |||||||| ||||| |||||||||||||||||||||| |||||||||| ||||||| |||||| ||||   |||||||||||||    
T  31624086 aagctataagctgttttcataggctatcttggagaaattatgaaaataagttgaaaacagcttatgaac-atgtcataagctgttttcataagttct 31624181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 337
Target Start/End: Original strand, 13907557 - 13907684
Alignment:
Q  211 aataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtca 309  Q
    ||||||||| | ||| ||||||| || ||||||  | ||||||||||| || |||||||||||||||||||||  |||||| | | | ||||||||||||    
T  13907557 aataaagttaatttactttcgtataacctataagttgttttcataagccatcttggagaaattatgaaaataaactgaaaataacttgtgaacaatgtca 13907656  T
Q  310 caagccaatttcataagttctctcaaac 337  Q
     ||||   |||||||| |||||||||||    
T  13907657 gaagctgttttcataaattctctcaaac 13907684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 262 - 340
Target Start/End: Complemental strand, 9912237 - 9912159
Alignment:
Q  262 ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaacagt 340  Q
    |||||||| ||||||||||||| | |||||||| |||||||||||||| ||||   ||||||||||||||  |||||||    
T  9912237 ttggagaacttatgaaaataagctcaaaacagcttatgaacaatgtcataagctggtttcataagttctccgaaacagt 9912159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 336
Target Start/End: Original strand, 31813174 - 31813259
Alignment:
Q  252 cataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaa 336  Q
    |||||||||| ||||||||  |||||||||||| ||||||| || |||||||||| ||| |||| | |||||||||||||| ||||    
T  31813174 cataagctatcttggagaacatatgaaaataagctgaaaacggcttatgaacaatctcataagcaattttcataagttctcccaaa 31813259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 303
Target Start/End: Original strand, 769110 - 769203
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatttggagaaattatgaaaataagatgaaaacagcatatgaaca 303  Q
    |||||||||| | || |||| ||| |||||||||||| |||||||||||||  | ||| | ||| |||| |||| |||||||||| ||||||||    
T  769110 aaataaagttaatttttttttgtataagctataaactgttttcataagctaacttgaggacttaagaaagtaagttgaaaacagcttatgaaca 769203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 34430522 - 34430455
Alignment:
Q  248 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagc 314  Q
    |||||||||||||| |||||||| ||||||||||||| |||||| ||| |||||  ||||||| ||||    
T  34430522 ttttcataagctatcttggagaagttatgaaaataagctgaaaaaagcttatgataaatgtcataagc 34430455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 294
Target Start/End: Complemental strand, 8365076 - 8364990
Alignment:
Q  209 taaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagc 294  Q
    ||||| |||||||||| ||||  || ||| |||||||| ||||||||||||||  ||| ||| | ||||||||||| ||||||||||    
T  8365076 taaattaagttcaattgtttttatataagttataaactgttttcataagctatcatggtgaactgatgaaaataagctgaaaacagc 8364990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 835310 - 835265
Alignment:
Q  248 ttttcataagctat-ttggagaaattatgaaaataagatgaaaaca 292  Q
    |||||||||||||| |||||||| ||||||||||||| ||||||||    
T  835310 ttttcataagctatcttggagaacttatgaaaataagctgaaaaca 835265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 340
Target Start/End: Original strand, 2454991 - 2455090
Alignment:
Q  241 taaacttttttc--ataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaac 337  Q
    ||||||||||||  ||||| ||| |||||||| | ||||||||||| |||||||||  |||||||||||||| |||    ||||| |||||||| |||||    
T  2454991 taaacttttttcgtataagttatgttggagaactaatgaaaataagctgaaaacaggttatgaacaatgtcataag---ttttcagaagttctcccaaac 2455087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 9109325 - 9109252
Alignment:
Q  235 aagctataaacttttttcataagcta-tttggagaaattatgaaaataagatgaaaacagcatatgaacaatgt 307  Q
    ||||||||| || ||||||| | ||| |||||||||  |||||||||||| |||||||| | ||||||||||||    
T  9109325 aagctataagctgttttcattaactaatttggagaacctatgaaaataaggtgaaaacaacttatgaacaatgt 9109252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 210 - 336
Target Start/End: Original strand, 1625871 - 1625998
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||||||||| |||| |||||||| ||| |||||  | |||||||||||||| |||||||| ||| |||||| || |||||||| | |||||||| ||||    
T  1625871 aaataaagttaaattgttttcgtataagttataagttgttttcataagctatcttggagaacttacgaaaatcagctgaaaacatcttatgaacattgtc 1625970  T
Q  309 acaagccaatttcataagttctctcaaa 336  Q
    | |||| | |||||||||||||||||||    
T  1625971 ataagctactttcataagttctctcaaa 1625998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 210 - 328
Target Start/End: Original strand, 18066099 - 18066218
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||||||||| |||| ||||| || ||||||||| || |||||||||||||| |||||||| ||| ||||||||| |||||| ||| ||||| |||||||    
T  18066099 aaataaagttaaattgttttcatataagctataagctgttttcataagctatcttggagaacttaagaaaataaggtgaaaatagcttatgagcaatgtc 18066198  T
Q  309 acaagccaatttcataagtt 328  Q
    | ||||   |||||||||||    
T  18066199 ataagctgttttcataagtt 18066218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 214 - 340
Target Start/End: Original strand, 26626848 - 26626975
Alignment:
Q  214 aaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaa 312  Q
    |||||| |||| |||||||| |||||| || || |||||||||||||| ||| |||| ||||||||||||  |||||||||  |||||||||||||| ||    
T  26626848 aaagttaaattgttttcgtataagctagaagctgttttcataagctatcttgcagaacttatgaaaataacctgaaaacagattatgaacaatgtcataa 26626947  T
Q  313 gccaatttcataagttctctcaaacagt 340  Q
    || | |||| ||||||||| || |||||    
T  26626948 gctattttcgtaagttctcccatacagt 26626975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 248 - 338
Target Start/End: Complemental strand, 40682455 - 40682365
Alignment:
Q  248 ttttcataagctatttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaaca 338  Q
    |||||||||| ||| | ||||| ||||||||||||| |||||||| | |||||||||||||| |||| | ||| | |||||||| ||||||    
T  40682455 ttttcataagatatcttgagaacttatgaaaataagttgaaaacaacttatgaacaatgtcataagctattttaacaagttctcccaaaca 40682365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 8017409 - 8017477
Alignment:
Q  214 aaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaata 281  Q
    |||||| |||||||||| || ||||| |||||| |||||||||||||| |||||||| |||||||||||    
T  8017409 aaagttaaattattttcatataagctgtaaactgttttcataagctatcttggagaacttatgaaaata 8017477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 222 - 386
Target Start/End: Original strand, 2142636 - 2142802
Alignment:
Q  222 attattttcgtacaagctataaacttttttcataagctattt--ggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatt 319  Q
    |||||||| ||| |||||||||  | |||||||||  ||| |  |||||| ||||||||||||| | ||||||||  ||||||| ||||||||     ||    
T  2142636 attatttttgtataagctataagttgttttcataatttatcttgggagaatttatgaaaataagctaaaaacagctaatgaacattgtcacaacttgttt 2142735  T
Q  320 tcataagttctctcaaacagttcgatagaacttacgcaagttgataaatttaaataagtcaatccaa 386  Q
    |||||||||||| ||||||||   ||| |||||| ||| || |||||| | ||||||||||| ||||    
T  2142736 tcataagttctcccaaacagtctcataaaacttatgcatgtagataaactcaaataagtcaaaccaa 2142802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 330
Target Start/End: Original strand, 750680 - 750762
Alignment:
Q  249 tttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttct 330  Q
    ||||||||||||| |||||||| ||||| ||||||| | |||||||| ||||||||||||||  |||   |||||||||||||    
T  750680 tttcataagctatcttggagaacttatgcaaataagctcaaaacagcttatgaacaatgtcattagctcttttcataagttct 750762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 680485 - 680558
Alignment:
Q  221 aattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacag 293  Q
    |||| |||||||| ||||||||| || |||||||||||||| ||| |||| || |||||||||| |||||||||    
T  680485 aattgttttcgtataagctataagctattttcataagctatcttgaagaacttgtgaaaataagctgaaaacag 680558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 12464572 - 12464491
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaa 290  Q
    |||||||||| |||| |||| ||| | ||||||| || |||||||||||||| |||||||| || |||||||||| ||||||    
T  12464572 aaataaagttaaattgtttttgtatatgctataagctattttcataagctatcttggagaacttgtgaaaataagctgaaaa 12464491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 340
Target Start/End: Complemental strand, 26143740 - 26143608
Alignment:
Q  210 aaataaagttcaattattttcgtacaag-ctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgt 307  Q
    ||||||||||||||||| |||||| ||  || ||| || |||||||||||||  |||||||| ||||||||||||| |||||| | | | |||||||||     
T  26143740 aaataaagttcaattatattcgtaaaaaactgtaagctgttttcataagctaacttggagaacttatgaaaataagctgaaaataacctgtgaacaatga 26143641  T
Q  308 cacaagccaatttcataagttctctcaaacagt 340  Q
    || |||    |||| ||||||||| ||||||||    
T  26143640 cataagttgttttcgtaagttctcccaaacagt 26143608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 40279416 - 40279476
Alignment:
Q  248 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgt 307  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||||  |||| |||||||    
T  40279416 ttttcataagctatattggagaacttatgaaaataagttgaaaacagtttatggacaatgt 40279476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 337
Target Start/End: Original strand, 16451118 - 16451217
Alignment:
Q  239 tataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaac 337  Q
    ||||| || ||||| |||||||| |||||||| |  |||||||||| ||||||||||  ||||||||||||| |||    |||||||||||||| |||||    
T  16451118 tataagctgttttcgtaagctatcttggagaactcgtgaaaataagctgaaaacagctcatgaacaatgtcataagttgttttcataagttctcccaaac 16451217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 303
Target Start/End: Complemental strand, 18962137 - 18962042
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaat-aagatgaaaacagcatatgaaca 303  Q
    |||||||||| || | ||||| || |||||||||||| ||||||||||||||  |||||| | |||| |||| ||| ||||||||||| |||||||    
T  18962137 aaataaagttaaactgttttcatataagctataaactattttcataagctatcatggagagactatggaaataaagctgaaaacagcacatgaaca 18962042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 304
Target Start/End: Complemental strand, 28039431 - 28039336
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaa 304  Q
    ||||||||| ||||| ||||| || || |||||| |  |||||||||||| | ||||| || ||||| ||||||| |||||||||| |||||||||    
T  28039431 aaataaagtccaattgttttcatataaactataagcaattttcataagctttcttggaaaagttatggaaataagctgaaaacagcttatgaacaa 28039336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 40279276 - 40279335
Alignment:
Q  248 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatg 306  Q
    |||||||||||||| |||||||| |||||||||| || |||||||||  |||||||||||    
T  40279276 ttttcataagctatattggagaacttatgaaaattagctgaaaacagtttatgaacaatg 40279335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 40279346 - 40279405
Alignment:
Q  248 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatg 306  Q
    |||||||||||||| |||||||| |||||||||| || |||||||||  |||||||||||    
T  40279346 ttttcataagctatattggagaacttatgaaaattagctgaaaacagtttatgaacaatg 40279405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 7928345 - 7928299
Alignment:
Q  262 ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||||||| ||||||||||||| |||||||| | |||||||||||||    
T  7928345 ttggagaacttatgaaaataagctgaaaacaacttatgaacaatgtc 7928299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 303
Target Start/End: Complemental strand, 12313272 - 12313178
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaaca 303  Q
    |||||||||| ||||||||| ||  |||||| ||| | ||| |||||||||| |||||||  ||||||||||||| ||||| || | ||||||||    
T  12313272 aaataaagttaaattatttttgtttaagctacaaattgtttacataagctatcttggagagcttatgaaaataaggtgaaatcaacttatgaaca 12313178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 309
Target Start/End: Original strand, 16398123 - 16398185
Alignment:
Q  248 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtca 309  Q
    |||||||||| ||| |||||||| ||||||||||||| |||||||||| || || ||||||||    
T  16398123 ttttcataagttatgttggagaacttatgaaaataagctgaaaacagcttacgagcaatgtca 16398185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 43868331 - 43868289
Alignment:
Q  250 ttcataagctatttggagaaattatgaaaataagatgaaaaca 292  Q
    |||||||||||||||||||| ||||||||||||| | ||||||    
T  43868331 ttcataagctatttggagaacttatgaaaataagctaaaaaca 43868289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 337
Target Start/End: Original strand, 45229520 - 45229610
Alignment:
Q  248 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaac 337  Q
    |||||||||||||| || ||||| ||||||||||||| |||||| |||  ||||| ||||||| |||    |||||||||||||| |||||    
T  45229520 ttttcataagctatcttcgagaacttatgaaaataagctgaaaaaagctaatgaaaaatgtcataaggtcttttcataagttctcccaaac 45229610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 10646350 - 10646297
Alignment:
Q  248 ttttcataagctatttg-gagaaattatgaaaataagatgaaaacagcatatga 300  Q
    ||||||||||||||||  ||||| ||||||||||||||||||||| || |||||    
T  10646350 ttttcataagctattttagagaacttatgaaaataagatgaaaactgcttatga 10646297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 15977994 - 15978039
Alignment:
Q  248 ttttcataagctattt-ggagaaattatgaaaataagatgaaaaca 292  Q
    |||||||||||||||| ||||| |||||||||||||| ||||||||    
T  15977994 ttttcataagctattttggagagattatgaaaataagctgaaaaca 15978039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 33319883 - 33319830
Alignment:
Q  238 ctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaa 290  Q
    ||||||||| ||||||||| |||| |||||||| ||||||||||||| ||||||    
T  33319883 ctataaactgttttcataaactatcttggagaacttatgaaaataagctgaaaa 33319830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 35379077 - 35379020
Alignment:
Q  248 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaa 304  Q
    |||||||||||||| |||||||  ||||||||||||| |||||||| | |||||||||    
T  35379077 ttttcataagctatcttggagagcttatgaaaataagctgaaaacaacttatgaacaa 35379020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 308
Target Start/End: Original strand, 36043881 - 36043974
Alignment:
Q  216 agttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||| |||| |||||||| |||||||||||| | ||||| || ||| |||||||  |||||||| | || | |||||||| |||||||||||||    
T  36043881 agttaaattgttttcgtataagctataaactgtcttcattagttatcttggagagcttatgaaattgagctaaaaacagcttatgaacaatgtc 36043974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 40279168 - 40279265
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatg 306  Q
    |||| ||||| |||| |||| ||| ||| |||||  | |||||||||||||| |||||||| |||||||||| || |||||| ||  |||||||||||    
T  40279168 aaatgaagttaaattgttttggtataagatataagttgttttcataagctatgttggagaacttatgaaaattagctgaaaatagtttatgaacaatg 40279265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 309
Target Start/End: Original strand, 3611197 - 3611297
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||||||||| |||| |||| ||| |   |||| ||| |||||| ||||||| |||||||| ||||||||||||| | |||||||  |||||| ||||||    
T  3611197 aaataaagttaaattgtttttgtatagtttatagactgttttcacaagctatcttggagaacttatgaaaataagctaaaaacagtttatgaataatgtc 3611296  T
Q  309 a 309  Q
    |    
T  3611297 a 3611297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 309
Target Start/End: Original strand, 9174814 - 9174886
Alignment:
Q  238 ctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtca 309  Q
    |||||| || |||||||||||||| ||  |||  ||||||||||||| |||||| ||| ||||||||||||||    
T  9174814 ctataagctgttttcataagctatcttacagagcttatgaaaataagctgaaaatagcttatgaacaatgtca 9174886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 21788341 - 21788385
Alignment:
Q  265 gagaaattatgaaaataagatgaaaacagcatatgaacaatgtca 309  Q
    ||||| ||||||||||||| |||||||| || |||||||||||||    
T  21788341 gagaacttatgaaaataagttgaaaacaacaaatgaacaatgtca 21788385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 43511111 - 43511151
Alignment:
Q  264 ggagaaattatgaaaataagatgaaaacagcatatgaacaa 304  Q
    |||||| ||||||||||||| |||||||||| |||||||||    
T  43511111 ggagaacttatgaaaataagctgaaaacagcttatgaacaa 43511151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 210 - 340
Target Start/End: Original strand, 20526417 - 20526548
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagcta-tttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||||||||| |||||| || ||||| ||||||| || ||||||||||||| ||||||||| | ||||||||||| | |||||||| || ||| |||||     
T  20526417 aaataaagttaaattatgtttgtacatgctataagctgttttcataagctattttggagaactaatgaaaataagctaaaaacagcttacgaaaaatgtg 20526516  T
Q  309 acaagccaatttcataagttctctcaaacagt 340  Q
    | || |   |||||||||||||||||||||||    
T  20526517 ataaactgttttcataagttctctcaaacagt 20526548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 331
Target Start/End: Original strand, 39967891 - 39968013
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatttg-gagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    ||||||| || |||| ||||||||| ||||||||  | |||||||||||||| || ||||| | ||||||||||| |||||||||| ||||||||||| |    
T  39967891 aaataaacttaaattgttttcgtactagctataagttgttttcataagctatctgagagaactaatgaaaataagttgaaaacagcttatgaacaatgcc 39967990  T
Q  309 acaagccaatttcataagttctc 331  Q
    | ||||   ||||||||||||||    
T  39967991 ataagctgttttcataagttctc 39968013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 239 - 309
Target Start/End: Original strand, 36517579 - 36517650
Alignment:
Q  239 tataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtca 309  Q
    |||||||| |||||||||||||| |||||||||||||||||||||  |||||| ||| ||||||||||||||    
T  36517579 tataaactattttcataagctatcttggagaaattatgaaaataaactgaaaatagcttatgaacaatgtca 36517650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 221 - 283
Target Start/End: Complemental strand, 39393665 - 39393603
Alignment:
Q  221 aattattttcgtacaagctataaacttttttcataagctatttggagaaattatgaaaataag 283  Q
    ||||||||| |||  ||||||||  |||||||||||||||||||||||| |||||||||||||    
T  39393665 aattatttttgtatgagctataagtttttttcataagctatttggagaacttatgaaaataag 39393603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 385
Target Start/End: Original strand, 33678754 - 33678927
Alignment:
Q  213 taaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcaca 311  Q
    ||||||| |||  |||| ||| ||||||||| || |||||||||||||| ||||| || || |||||||||| |||||||| |  ||||||||||| | |    
T  33678754 taaagttaaatggtttttgtaaaagctataagctgttttcataagctatcttggaaaacttgtgaaaataagttgaaaacatctcatgaacaatgttata 33678853  T
Q  312 agccaatttcataagttctctcaaacagttcgatagaacttacgcaagttgataaatttaaataagtcaatcca 385  Q
    ||    |||||||||||||| ||||  ||   | | |||||| |||||| ||||| |||||||||| |||||||    
T  33678854 agttgttttcataagttctcccaaattgtctcacaaaacttatgcaagtagataagtttaaataagccaatcca 33678927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 301
Target Start/End: Complemental strand, 40689085 - 40688993
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaa 301  Q
    |||||||||| |||||||||| || ||||||||| || | ||||||||||||  |||| || ||||||||||||| | |||||||| ||||||    
T  40689085 aaataaagttaaattattttcatataagctataagctgtgttcataagctatcctggataacttatgaaaataagctcaaaacagcttatgaa 40688993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 340
Target Start/End: Original strand, 39907774 - 39907903
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||||| ||| |||| |||| ||| |||||||||||| ||||||||| |||| || ||||| | ||||||||||| ||||||||||  ||||||| || |    
T  39907774 aaataaggttaaattgtttttgtataagctataaactgttttcataaactatcttagagaactaatgaaaataagctgaaaacagctaatgaaca-tg-c 39907871  T
Q  309 acaagccaatttcataagttctctcaaacagt 340  Q
    | ||||  |||| | |||||||||||||||||    
T  39907872 ataagctcattttacaagttctctcaaacagt 39907903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 44821930 - 44822013
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatt-tggagaaattatgaaaataagatgaaaaca 292  Q
    |||||||||  |||| |||| ||| ||| ||||| || ||||||||||||||| ||||||| ||||||||||||| ||||||||    
T  44821930 aaataaagtcaaattgtttttgtataagttataagctgttttcataagctattctggagaacttatgaaaataagttgaaaaca 44822013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 340
Target Start/End: Complemental strand, 20527011 - 20526897
Alignment:
Q  227 tttcgtacaagctataaacttttttcataagctatt-tggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataa 325  Q
    ||||||| |||||| || || ||||||||||||||  || |||| ||||||||||||| |||||| | | ||| |||||| ||| ||||   |||||| |    
T  20527011 tttcgtaaaagctacaagctgttttcataagctatagtgtagaacttatgaaaataagctgaaaagatcttataaacaatctcataagctgttttcatca 20526912  T
Q  326 gttctctcaaacagt 340  Q
    |||||||||||||||    
T  20526911 gttctctcaaacagt 20526897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 25596032 - 25596087
Alignment:
Q  238 ctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaaca 292  Q
    ||||||||| |||||||||||||| |||||||  ||||||||||||| ||||||||    
T  25596032 ctataaactcttttcataagctatcttggagagcttatgaaaataagttgaaaaca 25596087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 34035926 - 34036009
Alignment:
Q  248 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttct 330  Q
    |||||||||||||| || ||||| ||  ||||||||| |||||||| | |||||||||||||| |||  | |||||||||||||    
T  34035926 ttttcataagctatcttagagaacttgcgaaaataagttgaaaacaacttatgaacaatgtcataagttattttcataagttct 34036009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 340
Target Start/End: Original strand, 17248530 - 17248654
Alignment:
Q  214 aaagttcaattattttcgtacaagctataaacttttttcataagctatttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaag 313  Q
    |||||| |||| |||| ||| ||||||||| || |||||||||| | || | |||| ||||||||||||| | ||| |||| |||||||||||| | |||    
T  17248530 aaagttaaattgtttttgtataagctataagctcttttcataagatcttag-agaacttatgaaaataaggt-aaatcagcttatgaacaatgttataag 17248627  T
Q  314 ccaatttcataagttctctcaaacagt 340  Q
    |   ||| |||||||||| ||||||||    
T  17248628 ctgtttttataagttctcccaaacagt 17248654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 340
Target Start/End: Complemental strand, 44989739 - 44989645
Alignment:
Q  248 ttttcataagctat-ttggagaaattatgaaaataagatg-aaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaacagt 340  Q
    |||||||||| ||| ||| |||||||||||||||||| || |||||||| | |||||||||||| |||    ||||||||||| || ||||||||    
T  44989739 ttttcataagatatcttgtagaaattatgaaaataagctgcaaaacagcttgtgaacaatgtcagaagttgttttcataagttttcccaaacagt 44989645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 47177611 - 47177681
Alignment:
Q  214 aaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataag 283  Q
    |||||| |||| ||||| || ||||||||| || |||||| ||||||| |||||||| |||||||||||||    
T  47177611 aaagttaaattgttttcatataagctataagctgttttcaaaagctatcttggagaatttatgaaaataag 47177681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 12110331 - 12110404
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataa 282  Q
    |||||||||  |||| |||| ||| ||||||||| || |||||||||||||| ||| |||| ||||||||||||    
T  12110331 aaataaagtcaaattgttttggtataagctataagctgttttcataagctatcttgaagaacttatgaaaataa 12110404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 22283843 - 22283758
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagc 294  Q
    |||||||||| |||| |||| |||  ||||||||||| ||||||||| | || || ||||| ||||| ||||||| ||||||||||    
T  22283843 aaataaagttaaattgtttttgtatcagctataaactgttttcataaaccatcttagagaacttatggaaataagctgaaaacagc 22283758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 43648227 - 43648292
Alignment:
Q  226 ttttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaa 290  Q
    |||||||| | | ||||| || |||||||||||||| ||||||||| |||||||||||| ||||||    
T  43648227 ttttcgtatatgatataagctgttttcataagctatcttggagaaaatatgaaaataagttgaaaa 43648292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 337
Target Start/End: Original strand, 1706593 - 1706721
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||||| |||||||| |||||||| ||||||||| || ||||||||| |||| ||||| |  ||||||||||||| || ||| ||| ||||||||||| |    
T  1706593 aaataatgttcaattgttttcgtagaagctataagctgttttcataaactatcttggacagcttatgaaaataagttggaaatagcttatgaacaatgcc 1706692  T
Q  309 acaagccaatttcataagttctctcaaac 337  Q
    | ||||   |||||||| |||||||||||    
T  1706693 ataagctgttttcataatttctctcaaac 1706721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 340
Target Start/End: Original strand, 22661980 - 22662112
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaactttt-ttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgt 307  Q
    ||||||||||||||| ||| |||| ||||||||| ||||| ||||||||||||  ||||||| |||||| ||||||  ||||||| |  |||| ||||||    
T  22661980 aaataaagttcaattttttacgtataagctataagcttttcttcataagctatcatggagaacttatgacaataagcagaaaacaactcatgatcaatgt 22662079  T
Q  308 cacaagccaatttcataagttctctcaaacagt 340  Q
    || || |  ||||||||||||| | ||||||||    
T  22662080 cataaactgatttcataagttcccccaaacagt 22662112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 340
Target Start/End: Original strand, 22666459 - 22666591
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaac-ttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgt 307  Q
    ||||||||||||||| ||| |||| ||||||||| | ||||||||||||||||  ||||||| |||||| ||||||  ||||||| |  |||| ||||||    
T  22666459 aaataaagttcaattttttacgtataagctataagctttttttcataagctatcatggagaacttatgacaataagcagaaaacaactcatgatcaatgt 22666558  T
Q  308 cacaagccaatttcataagttctctcaaacagt 340  Q
    || || |  ||||||||||||| | ||||||||    
T  22666559 cataaactgatttcataagttcccccaaacagt 22666591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 28300398 - 28300315
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaaca 292  Q
    |||||||||| |||| |||| ||| |||||||||||| |||||||| ||||| ||| |||  ||||||||||||| ||||||||    
T  28300398 aaataaagttaaattgtttttgtataagctataaactattttcataggctatcttgaagagcttatgaaaataagttgaaaaca 28300315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 51630082 - 51630165
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaaca 292  Q
    |||||||||| |||| ||||  || ||||||||| || |||||||||||||| ||| |||| ||||||||||||| ||||||||    
T  51630082 aaataaagttaaattgttttgatataagctataagctattttcataagctatcttgaagaatttatgaaaataagctgaaaaca 51630165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 55414492 - 55414414
Alignment:
Q  237 gctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagc 314  Q
    |||||||| | |||||||||| ||| |||||||| ||||||||||||| |||||| ||| |||||| ||||||| ||||    
T  55414492 gctataaattgttttcataagttatcttggagaacttatgaaaataagttgaaaaaagcttatgaaaaatgtcataagc 55414414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 3155574 - 3155671
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatg 306  Q
    |||||||||| |||| |||| |||||||||| || || ||||||||| |||| ||| |||| | ||||||||||| |||||||||  || ||||||||    
T  3155574 aaataaagttaaattgtttttgtacaagctacaagctgttttcataaactatcttgaagaactaatgaaaataagctgaaaacagtttacgaacaatg 3155671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 331
Target Start/End: Complemental strand, 17822926 - 17822842
Alignment:
Q  248 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctc 331  Q
    |||||||||||||| |||||||| ||||||||||||| | |||| ||| |||||| ||||||| ||||   ||||||| ||||||    
T  17822926 ttttcataagctatcttggagaacttatgaaaataagctaaaaaaagcttatgaaaaatgtcataagctgttttcatatgttctc 17822842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 336
Target Start/End: Original strand, 24169261 - 24169361
Alignment:
Q  237 gctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaa 335  Q
    |||||||| | |||||| ||||||| |||||||  ||||||||||||| |||||| | | |||||| ||||||| |||| | ||| | ||||||||||||    
T  24169261 gctataaaatgttttcacaagctatcttggagagcttatgaaaataagttgaaaaaatcttatgaaaaatgtcataagctatttttaaaagttctctcaa 24169360  T
Q  336 a 336  Q
    |    
T  24169361 a 24169361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 40174537 - 40174633
Alignment:
Q  213 taaagttcaattattttcgtacaagctataaacttttttcataagcta-tttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    ||||||| |||| ||||| || ||||||||| || |||||||||||||  |||||||| || ||| |||||| |||||||||  |||| ||||||||    
T  40174537 taaagttaaattgttttcataaaagctataagctgttttcataagctacattggagaacttgtgataataagttgaaaacagtttatggacaatgtc 40174633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 338
Target Start/End: Complemental strand, 48719428 - 48719362
Alignment:
Q  271 ttatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaaca 338  Q
    ||||||||||||| |||||||||| || |||| |||||| || ||| |||||||||||| ||||||||    
T  48719428 ttatgaaaataagctgaaaacagcttacgaac-atgtcataaaccattttcataagttccctcaaaca 48719362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 825551 - 825505
Alignment:
Q  248 ttttcataagctattt-ggagaaattatgaaaataagatgaaaacag 293  Q
    |||||||||||||||| |||||| ||||||||||||| |||||||||    
T  825551 ttttcataagctattttggagaacttatgaaaataagctgaaaacag 825505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 35571714 - 35571636
Alignment:
Q  226 ttttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaaca 303  Q
    |||||||| ||||||||| || |||||||||||||| || ||||| || |||||||||| ||||| ||||  |||||||    
T  35571714 ttttcgtataagctataagctgttttcataagctatcttagagaacttgtgaaaataagttgaaaccagctcatgaaca 35571636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 43932431 - 43932489
Alignment:
Q  235 aagctataaacttttttcataagctatt-tggagaaattatgaaaataagatgaaaaca 292  Q
    |||||||||||| |||||||||| |||| || |||| || |||||||||||||||||||    
T  43932431 aagctataaactattttcataagttattctgaagaacttgtgaaaataagatgaaaaca 43932489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 24091433 - 24091481
Alignment:
Q  209 taaataaagttcaattattttcgtacaagctataaacttttttcataag 257  Q
    ||||||||||  |||||||||| || |||||||||||| ||||||||||    
T  24091433 taaataaagtcaaattattttcatataagctataaactgttttcataag 24091481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 49939981 - 49939929
Alignment:
Q  278 aataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttct 330  Q
    |||||| |||||||||| |||||||||||||| ||||   |||||||||||||    
T  49939981 aataagctgaaaacagcttatgaacaatgtcataagctcttttcataagttct 49939929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 291
Target Start/End: Complemental strand, 54392920 - 54392836
Alignment:
Q  208 ataaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaac 291  Q
    |||||||||||| |||| |||| ||| | ||||| | || |||| ||||| ||| ||||||||||| |||||||||| |||||||    
T  54392920 ataaataaagttaaattgtttttgtatatgctattagctgttttaataagatatcttggagaaattttgaaaataagttgaaaac 54392836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 209 - 340
Target Start/End: Original strand, 4576775 - 4576906
Alignment:
Q  209 taaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgt 307  Q
    ||||||||||| || |||||| ||||||| ||||| || |||||||||||||| ||| | || ||||||||||||| |||| ||| | ||| ||| ||||    
T  4576775 taaataaagttaaaatatttttgtacaagttataagctgttttcataagctatattgaataacttatgaaaataagctgaacacaacttataaac-atgt 4576873  T
Q  308 cacaagccaatttcataagttctctcaaacagt 340  Q
    || || | | ||||||||||| |||||||||||    
T  4576874 cataaactattttcataagttgtctcaaacagt 4576906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 45975675 - 45975759
Alignment:
Q  224 tattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgt 307  Q
    |||||| ||| |||||| || || |||||||||||||| |||||||| ||||||||||||| |||||||||| |||||| |||||    
T  45975675 tatttttgtataagctacaagctgttttcataagctatcttggagaatttatgaaaataagctgaaaacagcttatgaataatgt 45975759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 336
Target Start/End: Complemental strand, 10199507 - 10199381
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagcta-tttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||||||||  || |||||||||| || | |||| |||||||||||||||| ||| ||||  ||||||||||||| |||||||| | ||||||| |||||    
T  10199507 aaataaagtcaaactattttcgtataatcgataagcttttttcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaac-atgtc 10199409  T
Q  309 acaagccaatttcataagttctctcaaa 336  Q
    | |||| | |||||| ||||||| ||||    
T  10199408 ataagctattttcatgagttctcccaaa 10199381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 224 - 337
Target Start/End: Complemental strand, 7137083 - 7136970
Alignment:
Q  224 tattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttca 322  Q
    |||||| ||| || |||||| || |||||||||||||| |||||||| ||||||||||||| |||||| | | ||||||  |||||| |||| | |||||    
T  7137083 tatttttgtataatctataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatgaa-tatgtcataagcgattttca 7136985  T
Q  323 taagttctctcaaac 337  Q
    |||||||| ||||||    
T  7136984 taagttctttcaaac 7136970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 301
Target Start/End: Original strand, 9656621 - 9656713
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaa 301  Q
    |||||||||| |||||||||| || ||||||||| || | ||||||||||||  ||||  ||||||||||||||| | |||||||| ||||||    
T  9656621 aaataaagttaaattattttcatataagctataagctgtgttcataagctatcctggatgaattatgaaaataagctcaaaacagcttatgaa 9656713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 11941296 - 11941364
Alignment:
Q  272 tatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaacagt 340  Q
    |||||||||||| |||||||||| |||||||||||| | |||| | ||||||||| |||| ||||||||    
T  11941296 tatgaaaataagctgaaaacagcttatgaacaatgttataagctattttcataagctctcccaaacagt 11941364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 309
Target Start/End: Complemental strand, 24915150 - 24915050
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||||||||| |||| |||| ||| | ||||||| || |||||||||||| | |||||||| || |||||||||| |||||| ||| |||||| ||||||    
T  24915150 aaataaagttaaattgtttttgtatatgctataagctgttttcataagctgtcttggagaacttgtgaaaataagttgaaaaaagcttatgaaaaatgtc 24915051  T
Q  309 a 309  Q
    |    
T  24915050 a 24915050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 51695556 - 51695496
Alignment:
Q  248 ttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgt 307  Q
    |||||||||||||| |||||||| ||||||||||||| |||||| ||| ||||||||||||    
T  51695556 ttttcataagctatcttggagaatttatgaaaataagctgaaaatagcttatgaacaatgt 51695496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 27820436 - 27820337
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||||||| | |||| |||  ||| ||||||||  || |||| ||||||||| |||||||| ||||||||||||| |||||| ||| |||||||||||||    
T  27820436 aaataaagctaaattgtttatgtataagctatatgctgtttttataagctatcttggagaatttatgaaaataagctgaaaatagcttatgaacaatgtc 27820337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 339
Target Start/End: Complemental strand, 3887731 - 3887601
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctattt-ggagaaattatgaaaataagatgaaaacagcatatgaacaatgtc 308  Q
    |||||||||| ||||| |||| ||| |||||||| ||  ||| | ||||||  | |||||| ||||||||||||| | |||||||| |||||||||||||    
T  3887731 aaataaagttaaattaatttcttacgagctataagctgattttacaagctagctaggagaacttatgaaaataagttaaaaacagcttatgaacaatgtc 3887632  T
Q  309 acaagccaatttcataagttctctcaaacag 339  Q
    | |||    |||||||||||||  |||||||    
T  3887631 ataagatgttttcataagttcttccaaacag 3887601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 340
Target Start/End: Original strand, 7941615 - 7941708
Alignment:
Q  248 ttttcataagctattt-ggagaaattatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaacagt 340  Q
    |||||||||||||||| |||||| ||||||||||||| |||||| ||| |  ||||||||||| ||||   |||||||| ||||  ||||||||    
T  7941615 ttttcataagctatttcggagaacttatgaaaataagttgaaaatagcttcggaacaatgtcataagctgttttcataaattcttccaaacagt 7941708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 341
Target Start/End: Complemental strand, 39976312 - 39976177
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctattt-ggagaaattatgaaaataaga---tgaaaacagcatatgaacaat 305  Q
    |||||||||| | || |||  ||| |||||||| ||| |||||||||||||||| || ||| |||||||||||| |   |||| | ||| | ||||||||    
T  39976312 aaataaagttgatttgtttctgtataagctatacactattttcataagctattttggggaacttatgaaaataataacctgaataaagcgtgtgaacaat 39976213  T
Q  306 gtcacaagccaatttcataagttctctcaaacagtt 341  Q
    |||| ||   | ||||||||||||||||||||||||    
T  39976212 gtcataaattattttcataagttctctcaaacagtt 39976177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 301
Target Start/End: Original strand, 34290207 - 34290299
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaa 301  Q
    |||||||||| | ||  ||| ||| ||||||||| || |||||||||||||| ||| |||| ||||||||||||| |||||||| | ||||||    
T  34290207 aaataaagttaattttattttgtataagctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatgaa 34290299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 299
Target Start/End: Original strand, 35179125 - 35179200
Alignment:
Q  225 attttcgtacaagctataaacttttttcataagctatt-tggagaaattatgaaaataagatgaaaacagcatatg 299  Q
    ||||||||  ||| ||||| || |||||||||| |||| ||||||| ||||||||||||| |||||||||| ||||    
T  35179125 attttcgtttaagttataagctgttttcataagttattatggagaacttatgaaaataagctgaaaacagcttatg 35179200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 38503511 - 38503464
Alignment:
Q  262 ttggagaaattatgaaaataagatgaaaacagcatatgaacaatgtca 309  Q
    |||||||| ||||||||||||| |||||||| | ||||||||||||||    
T  38503511 ttggagaacttatgaaaataagctgaaaacaacttatgaacaatgtca 38503464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 338
Target Start/End: Complemental strand, 47498876 - 47498809
Alignment:
Q  271 ttatgaaaataagatgaaaacagcatatgaacaatgtcacaagccaatttcataagttctctcaaaca 338  Q
    ||||||||||||| | |||||| | |||||||||| ||| |||| | |||||||||||||| ||||||    
T  47498876 ttatgaaaataagctaaaaacaacttatgaacaatatcataagctattttcataagttctcccaaaca 47498809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 10744300 - 10744366
Alignment:
Q  238 ctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaaca 303  Q
    |||||| || |||||||||||| | || ||||| |||| ||||||||||||||||||| ||||||||    
T  10744300 ctataagctgttttcataagctgtcttagagaacttataaaaataagatgaaaacagcttatgaaca 10744366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 303
Target Start/End: Complemental strand, 31517839 - 31517745
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaaca 303  Q
    |||||||||| ||||  |||| || ||||||||| || | ||||||| || | |||||||  ||||||||||||| |||||||||| ||||||||    
T  31517839 aaataaagttaaattgatttcatataagctataagctgtcttcataatctgtcttggagagcttatgaaaataagctgaaaacagcttatgaaca 31517745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 31918235 - 31918289
Alignment:
Q  221 aattattttcgtacaagctataaacttttttcataagctatttggagaaattatg 275  Q
    ||||||||||||| |||||||||  ||||||||||||||| || ||||| |||||    
T  31918235 aattattttcgtataagctataagattttttcataagctaatttgagaacttatg 31918289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 283
Target Start/End: Original strand, 49888738 - 49888812
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataag 283  Q
    |||||||||| |||| |||||||| ||||||| |  | |||||||||||||| || ||||| |||||||||||||    
T  49888738 aaataaagtttaattgttttcgtataagctattagttgttttcataagctatcttagagaacttatgaaaataag 49888812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 7218173 - 7218088
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatt-tggagaaattatgaaaataagatgaaaacagc 294  Q
    |||||||||  |||| ||||| || |||||||||  | ||||||||| ||||  ||||||| ||||||||||||| ||||||||||    
T  7218173 aaataaagtcaaattgttttcatataagctataagttgttttcataacctatcctggagaacttatgaaaataagttgaaaacagc 7218088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 14630040 - 14629971
Alignment:
Q  235 aagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagcatatgaaca 303  Q
    ||||||||| || |||||||||||||| |||||||  ||||| ||||||| |||||||| | ||||||||    
T  14630040 aagctataagctattttcataagctatcttggagactttatggaaataagctgaaaacaacttatgaaca 14629971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 32113657 - 32113714
Alignment:
Q  238 ctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaacagc 294  Q
    ||||||||| |||||||||| ||| |||||||  ||||||||||||| ||||||||||    
T  32113657 ctataaactgttttcataagttatgttggagattttatgaaaataagctgaaaacagc 32113714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 38882972 - 38882915
Alignment:
Q  248 ttttcataagctatttggagaaattatgaaaataagatgaaaacagcatatgaacaat 305  Q
    |||||||||||| | | ||||| ||||||||||||| |||||||| | ||||||||||    
T  38882972 ttttcataagctctctagagaacttatgaaaataagttgaaaacaccttatgaacaat 38882915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 48830175 - 48830123
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctatt 262  Q
    |||||||||  || ||||||| || |||||||||||| |||||||||||||||    
T  48830175 aaataaagtcaaactattttcatataagctataaactgttttcataagctatt 48830123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 291
Target Start/End: Complemental strand, 178424 - 178342
Alignment:
Q  210 aaataaagttcaattattttcgtacaagctataaacttttttcataagctat-ttggagaaattatgaaaataagatgaaaac 291  Q
    |||||||||| ||||||| ||||| ||||||| | || |||||| |||| || || ||||| ||||||||||||| |||||||    
T  178424 aaataaagttaaattattgtcgtataagctattagctgttttcacaagccatctttgagaacttatgaaaataagctgaaaac 178342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 50852 - 50889
Alignment:
Q  246 ttttttcataagctatttggagaaattatgaaaataag 283  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  50852 ttttttcataagttatttggagaacttatgaaaataag 50889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 21355 - 21311
Alignment:
Q  239 tataaacttttttcataagctat-ttggagaaattatgaaaataa 282  Q
    ||||| || |||||||||||||| |||||||||||||||||||||    
T  21355 tataagctgttttcataagctatattggagaaattatgaaaataa 21311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University