View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1435_high_129 (Length: 233)

Name: NF1435_high_129
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1435_high_129
NF1435_high_129
[»] chr3 (8 HSPs)
chr3 (116-223)||(7619604-7619711)
chr3 (122-223)||(7664183-7664284)
chr3 (4-68)||(11078411-11078475)
chr3 (1-64)||(13931718-13931781)
chr3 (2-59)||(19658311-19658368)
chr3 (2-61)||(17762424-17762483)
chr3 (2-61)||(19063744-19063803)
chr3 (2-64)||(12410137-12410196)
[»] chr1 (5 HSPs)
chr1 (2-61)||(23935342-23935401)
chr1 (2-61)||(31359089-31359148)
chr1 (2-61)||(8698620-8698679)
chr1 (2-68)||(2819570-2819636)
chr1 (85-123)||(18517526-18517564)
[»] scaffold0498 (1 HSPs)
scaffold0498 (2-64)||(3587-3649)
[»] scaffold0092 (1 HSPs)
scaffold0092 (2-74)||(7843-7915)
[»] scaffold0388 (1 HSPs)
scaffold0388 (2-64)||(5153-5215)
[»] chr2 (6 HSPs)
chr2 (2-68)||(19320685-19320751)
chr2 (2-64)||(15670897-15670959)
chr2 (2-61)||(22683143-22683202)
chr2 (2-64)||(14794142-14794204)
chr2 (2-44)||(25918440-25918482)
chr2 (2-40)||(27939765-27939803)
[»] chr4 (6 HSPs)
chr4 (5-64)||(32491129-32491188)
chr4 (1-61)||(18473789-18473849)
chr4 (2-61)||(24619409-24619468)
chr4 (2-60)||(17526677-17526735)
chr4 (6-61)||(23087448-23087503)
chr4 (10-58)||(20577052-20577100)
[»] chr6 (6 HSPs)
chr6 (2-61)||(15478108-15478167)
chr6 (2-64)||(18027046-18027108)
chr6 (2-61)||(15551754-15551813)
chr6 (1-38)||(15541787-15541824)
chr6 (2-42)||(12717057-12717097)
chr6 (2-42)||(12727706-12727746)
[»] scaffold0043 (1 HSPs)
scaffold0043 (4-58)||(2114-2168)
[»] chr8 (4 HSPs)
chr8 (2-64)||(12541396-12541458)
chr8 (4-58)||(19505772-19505826)
chr8 (4-58)||(1210082-1210136)
chr8 (2-42)||(17687756-17687796)
[»] chr7 (5 HSPs)
chr7 (2-60)||(2501372-2501430)
chr7 (2-64)||(15871419-15871481)
chr7 (2-55)||(10254663-10254716)
chr7 (2-61)||(11572535-11572594)
chr7 (6-42)||(16472466-16472502)
[»] scaffold1107 (1 HSPs)
scaffold1107 (2-41)||(2601-2640)
[»] scaffold0067 (1 HSPs)
scaffold0067 (2-41)||(16661-16700)
[»] scaffold0683 (1 HSPs)
scaffold0683 (4-42)||(175-213)
[»] chr5 (2 HSPs)
chr5 (2-42)||(14557906-14557946)
chr5 (2-42)||(14568543-14568583)


Alignment Details
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 116 - 223
Target Start/End: Original strand, 7619604 - 7619711
Alignment:
Q  116 tagagtctataatttatttcagaagttacatcaagtaaaagtgcatatattcacacaaaagtttgaaacacacaagacctgaactaacattacacctgcc 215  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||    
T  7619604 tagagtctataatttatttcagaagttacaacaagtaaaagtgcatatattcacacaaaagtttgaaacacacaaaaactgaactaacattacaccttcc 7619703  T
Q  216 ctcctttg 223  Q
    ||||||||    
T  7619704 ctcctttg 7619711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 7664284 - 7664183
Alignment:
Q  122 ctataatttatttcagaagttacatcaagtaaaagtgcatatattcacacaaaagtttgaaacacacaagacctgaactaacattacacctgccctcctt 221  Q
    ||||| |||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||    
T  7664284 ctatagtttatttcagaagttacaacaagtaaaattgtatatattcacacaaaagtttgaaacacacaagatctgaactaacattacaccttccctcatt 7664185  T
Q  222 tg 223  Q
    ||    
T  7664184 tg 7664183  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 11078475 - 11078411
Alignment:
Q  4 tcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacatttaaattgt 68  Q
    |||||||| |||||||| |||| |||||||||||||||| | |||||| ||||||||||||||||    
T  11078475 tcatacctttatataaaggaatgaagacttgaagatttgtagagactcaacaacatttaaattgt 11078411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 13931781 - 13931718
Alignment:
Q  1 ttttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacatttaaa 64  Q
    |||||||||||||||||||| |||| || |||| |||||| | |||||||| ||||||||||||    
T  13931781 ttttcatacctctatataaaggaatgaatacttaaagattagtatagactcaacaacatttaaa 13931718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 19658311 - 19658368
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacat 59  Q
    ||||||||||||||||||| |||| |||||||||| ||| | | ||||||||||||||    
T  19658311 tttcatacctctatataaaggaatgaagacttgaatattagtagagactctacaacat 19658368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 17762424 - 17762483
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacattt 61  Q
    |||||||||||||||| || |||| |||||||||||||| | | | ||||||||||||||    
T  17762424 tttcatacctctatatgaaggaatgaagacttgaagattagtagatactctacaacattt 17762483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 19063744 - 19063803
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacattt 61  Q
    |||||||||||||||| || |||| |||||||||||||| | | | ||||||||||||||    
T  19063744 tttcatacctctatatgaaggaatgaagacttgaagattagtagatactctacaacattt 19063803  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 12410137 - 12410196
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacatttaaa 64  Q
    ||||||||||| ||||||| ||||   |||||||||||| | | |||||||||||||||||||    
T  12410137 tttcatacctccatataaaggaat---gacttgaagattagtagagactctacaacatttaaa 12410196  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 23935342 - 23935401
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacattt 61  Q
    |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  23935342 tttcatacctctatataaaagaatgaagacttgaagattagcatatactctacaacattt 23935401  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 31359148 - 31359089
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacattt 61  Q
    |||||||| |||||||||| |||| |||||||||||||| | | ||||||||||||||||    
T  31359148 tttcatacatctatataaatgaatgaagacttgaagattagtagagactctacaacattt 31359089  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 8698679 - 8698620
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacattt 61  Q
    |||||||| |||||||||| |||| |||| ||||||||| | | ||||||||||||||||    
T  8698679 tttcatacatctatataaaggaatgaagatttgaagattagtagagactctacaacattt 8698620  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 2819570 - 2819636
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacatttaaattgt 68  Q
    |||||||||||||||||||  ||| |||| ||||||||| | |||||||||| |||||  |||||||    
T  2819570 tttcatacctctatataaagaaatgaagatttgaagattagtatagactctataacataaaaattgt 2819636  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 18517526 - 18517564
Alignment:
Q  85 tttcataacaactttcacattttagaaattttagagtct 123  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  18517526 tttcttaacaactttcatattttagaaattttagagtct 18517564  T

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Target: scaffold0498 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 3587 - 3649
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacatttaaa 64  Q
    ||||||||||||||||||| |||| |||||||||||||||| | |||||||||||||||||||    
T  3587 tttcatacctctatataaaggaatgaagacttgaagatttgtagagactctacaacatttaaa 3649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 7915 - 7843
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacatttaaattgtcctaaa 74  Q
    ||||||||||||||||||  ||||||||||||||||||| | | ||||||||||||||||||| ||| |||||    
T  7915 tttcatacctctatataagggaataaagacttgaagattagtagagactctacaacatttaaactgtgctaaa 7843  T

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Target: scaffold0388 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 5215 - 5153
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacatttaaa 64  Q
    ||||||| ||||||||||| |||| |||||||||||||||| | |||||||||||||||||||    
T  5215 tttcatatctctatataaaggaatgaagacttgaagatttgtagagactctacaacatttaaa 5153  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 19320685 - 19320751
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacatttaaattgt 68  Q
    ||||||||||||||||||| |||| || ||||||||||||| | |||||| ||||||||||||||||    
T  19320685 tttcatacctctatataaaggaatgaaaacttgaagatttgtagagactcaacaacatttaaattgt 19320751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 15670897 - 15670959
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacatttaaa 64  Q
    ||||||||||||||||||| |||| ||||||||||| |||| | |||||| ||||||||||||    
T  15670897 tttcatacctctatataaaggaatgaagacttgaagttttgtagagactcaacaacatttaaa 15670959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 22683202 - 22683143
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacattt 61  Q
    |||||||||| |||||||| |||| ||||||||||||||   ||||||||||||||||||    
T  22683202 tttcatacctttatataaatgaatgaagacttgaagattaagatagactctacaacattt 22683143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 14794142 - 14794204
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacatttaaa 64  Q
    ||||||||||||||||||| |||| || ||||||||||| | | |||||| ||||||||||||    
T  14794142 tttcatacctctatataaaggaatgaacacttgaagattagtagagactcaacaacatttaaa 14794204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 25918482 - 25918440
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgca 44  Q
    |||||||||||||||||||  ||| ||||||||||||||||||    
T  25918482 tttcatacctctatataaattaatgaagacttgaagatttgca 25918440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 27939803 - 27939765
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatt 40  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  27939803 tttcataccactatataaaggaataaagacttgaagatt 27939765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 32491129 - 32491188
Alignment:
Q  5 catacctctatataaaagaataaagacttgaagatttgcatagactctacaacatttaaa 64  Q
    |||||||||||||||| |||| |||||||||||||| | | |||||||||||||||||||    
T  32491129 catacctctatataaaggaatgaagacttgaagattagtagagactctacaacatttaaa 32491188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 18473849 - 18473789
Alignment:
Q  1 ttttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacattt 61  Q
    |||||| |||||||||||||||| |||| ||||||||||||  | ||||||||||||||||    
T  18473849 ttttcacacctctatataaaagagtaaatacttgaagatttatagagactctacaacattt 18473789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 24619468 - 24619409
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacattt 61  Q
    ||||||||||||||||||| |||| |||||||||||||| |   ||||||||||||||||    
T  24619468 tttcatacctctatataaatgaatgaagacttgaagattagtggagactctacaacattt 24619409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 17526677 - 17526735
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacatt 60  Q
    ||||||||||||||||||| |||| |||||||||| ||| | | |||||||||||||||    
T  17526677 tttcatacctctatataaaggaatgaagacttgaatattagtagagactctacaacatt 17526735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 23087503 - 23087448
Alignment:
Q  6 atacctctatataaaagaataaagacttgaagatttgcatagactctacaacattt 61  Q
    ||||||||||||||| |||| |||||||||||||| | | ||||||||||| ||||    
T  23087503 atacctctatataaaggaatgaagacttgaagattagtagagactctacaatattt 23087448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 20577100 - 20577052
Alignment:
Q  10 ctctatataaaagaataaagacttgaagatttgcatagactctacaaca 58  Q
    |||||||| ||||||| |||||||||||||||| | |||||| ||||||    
T  20577100 ctctatatgaaagaatgaagacttgaagatttgtagagactcaacaaca 20577052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 15478108 - 15478167
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacattt 61  Q
    ||||||||||||||||||| |||| |||||||||||||| | |  |||||||||||||||    
T  15478108 tttcatacctctatataaaggaatgaagacttgaagattagaagtgactctacaacattt 15478167  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 18027046 - 18027108
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacatttaaa 64  Q
    |||||||||||| |||||| |||| |||||||||||||| | | |||||| ||||||||||||    
T  18027046 tttcatacctctgtataaaggaatgaagacttgaagattagtagagactcaacaacatttaaa 18027108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 15551813 - 15551754
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacattt 61  Q
    ||||||||||||||||||| |||| ||||||| |||||||| | |||||  |||||||||    
T  15551813 tttcatacctctatataaaggaatgaagacttaaagatttgtagagactaaacaacattt 15551754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15541824 - 15541787
Alignment:
Q  1 ttttcatacctctatataaaagaataaagacttgaaga 38  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  15541824 ttttcatacctctatataaaggaatgaagacttgaaga 15541787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 12717057 - 12717097
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttg 42  Q
    ||||| ||||||||||||| |||| ||||||||||||||||    
T  12717057 tttcacacctctatataaaggaatgaagacttgaagatttg 12717097  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 12727706 - 12727746
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttg 42  Q
    ||||| ||||||||||||| |||| ||||||||||||||||    
T  12727706 tttcacacctctatataaaggaatgaagacttgaagatttg 12727746  T

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Target: scaffold0043 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 2114 - 2168
Alignment:
Q  4 tcatacctctatataaaagaataaagacttgaagatttgcatagactctacaaca 58  Q
    ||||||||||||||||| |||| |||||||||||||||| | |||||| ||||||    
T  2114 tcatacctctatataaaggaatgaagacttgaagatttgtagagactcaacaaca 2168  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 12541458 - 12541396
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacatttaaa 64  Q
    ||||| ||||||||||||| |||  |||||||||||||| | | |||||||||||||||||||    
T  12541458 tttcacacctctatataaaggaaagaagacttgaagattagtagagactctacaacatttaaa 12541396  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 19505772 - 19505826
Alignment:
Q  4 tcatacctctatataaaagaataaagacttgaagatttgcatagactctacaaca 58  Q
    ||||||||||||||||| |||| |||||||||||||||| | |||||| ||||||    
T  19505772 tcatacctctatataaatgaatgaagacttgaagatttgaagagactcaacaaca 19505826  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 1210082 - 1210136
Alignment:
Q  4 tcatacctctatataaaagaataaagacttgaagatttgcatagactctacaaca 58  Q
    ||||| ||||||||||| |||| |||||||||||||||| | |||||| ||||||    
T  1210082 tcataactctatataaaggaatgaagacttgaagatttgtagagactcaacaaca 1210136  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 17687796 - 17687756
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttg 42  Q
    ||||||| ||||||||||| |||| ||||||||||||||||    
T  17687796 tttcatatctctatataaaggaatgaagacttgaagatttg 17687756  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 2501372 - 2501430
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacatt 60  Q
    ||||||||||||||||||| |||| || ||||||||||| | | |||||||||||||||    
T  2501372 tttcatacctctatataaaggaatgaatacttgaagattagtagagactctacaacatt 2501430  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 15871419 - 15871481
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacatttaaa 64  Q
    ||||||||||||||||||| ||||  ||||||||| ||| | | |||||||||||||||||||    
T  15871419 tttcatacctctatataaaggaatggagacttgaatattagtagagactctacaacatttaaa 15871481  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 10254663 - 10254716
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctaca 55  Q
    ||||||||||||||||||| |||| |||||||||||||| | | ||||||||||    
T  10254663 tttcatacctctatataaaggaatgaagacttgaagattagtagagactctaca 10254716  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 11572535 - 11572594
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttgcatagactctacaacattt 61  Q
    |||||||||||||||||||  ||| ||| |||||||||| | | ||||||||||||||||    
T  11572535 tttcatacctctatataaagaaatgaagccttgaagattagtagagactctacaacattt 11572594  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 16472502 - 16472466
Alignment:
Q  6 atacctctatataaaagaataaagacttgaagatttg 42  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  16472502 atacctctatataaaggaatgaagacttgaagatttg 16472466  T

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Target: scaffold1107 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 2601 - 2640
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagattt 41  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  2601 tttcatacctctgtataaaagaatgaagacttgaagattt 2640  T

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Target: scaffold0067 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 16661 - 16700
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagattt 41  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  16661 tttcatacctctgtataaaagaatgaagacttgaagattt 16700  T

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Target: scaffold0683 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 213 - 175
Alignment:
Q  4 tcatacctctatataaaagaataaagacttgaagatttg 42  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  213 tcatacctctatataaaggaatgaagacttgaagatttg 175  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 14557946 - 14557906
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttg 42  Q
    ||||| ||||||||||||| |||| ||||||||||||||||    
T  14557946 tttcacacctctatataaaggaatgaagacttgaagatttg 14557906  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 14568583 - 14568543
Alignment:
Q  2 tttcatacctctatataaaagaataaagacttgaagatttg 42  Q
    ||||| ||||||||||||| |||| ||||||||||||||||    
T  14568583 tttcacacctctatataaaggaatgaagacttgaagatttg 14568543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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