View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_132 (Length: 229)
Name: NF1435_high_132
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_132 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 32183189 - 32183007
Alignment:
| Q |
14 |
aagaatatccctgcctcaccacaaacaacgctcagcctcaccacaagccaccaaaacaggccctggaacaacaacccacaaccagcacccactgctgtct |
113 |
Q |
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| T |
32183189 |
aagaatatccctgcctcgccacaaacaacgctcagcctcaccacaagccaccaaaacaggccctggaacaacaacccacaaccagcacccactgctgtct |
32183090 |
T |
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| Q |
114 |
accaaactgcatgccgcacccctccaccaggcataaaaaccaacaaaaaatctgctaccatccaacaaaagcagaaacataaa |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32183089 |
accaaactgcatgccgcacccctccaccaggcataaaaaccaacaaaaaatctgctaccatccaacaaaagcagaaacataaa |
32183007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 15859007 - 15858910
Alignment:
| Q |
14 |
aagaatatccctgcctcaccacaaacaacgctcagcctcaccacaagccaccaaaacaggccctggaac-aacaacccacaaccagcacccactgctg |
110 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| |||| |||||||||||||||||| |
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| T |
15859007 |
aagaatatccctgccttaccacaaacaacgcgcagcctcaccacaagccaccaaaacaggccctaaaacaaacaccccagaaccagcacccactgctg |
15858910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 15858905 - 15858870
Alignment:
| Q |
157 |
caaaaaatctgctaccatccaacaaaagcagaaaca |
192 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
15858905 |
caaaaaatttgctaccatccaacaaaagcagaaaca |
15858870 |
T |
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