View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1435_high_20 (Length: 452)

Name: NF1435_high_20
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1435_high_20
NF1435_high_20
[»] chr1 (2 HSPs)
chr1 (18-444)||(395881-396288)
chr1 (222-263)||(37941956-37941997)
[»] chr4 (4 HSPs)
chr4 (223-265)||(29373881-29373923)
chr4 (182-214)||(1133045-1133077)
chr4 (180-208)||(23983902-23983930)
chr4 (180-208)||(23990597-23990625)
[»] chr6 (1 HSPs)
chr6 (180-209)||(27984246-27984275)
[»] chr2 (3 HSPs)
chr2 (222-263)||(35993351-35993392)
chr2 (222-263)||(39962270-39962311)
chr2 (182-214)||(44458077-44458109)
[»] chr7 (3 HSPs)
chr7 (182-214)||(19302484-19302516)
chr7 (182-214)||(34036034-34036066)
chr7 (180-208)||(35267472-35267500)
[»] chr5 (1 HSPs)
chr5 (182-214)||(28578962-28578994)


Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 395881 - 396288
Alignment:
Q  18 tggatttccacttaacgaacttcttaaccgaaatgaaaactcagaggaggatacttctgctcaacgtgaagcacttcttaaaggtggtgatcaagttatc 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  395881 tggatttccacttaacgaacttcttaaccgaaataaaaactcagaggaggatacttctgctcaacgtgaagcacttcttaaaggtggtgatcaagttatc 395980  T
Q  118 tccgttcttcaagaaatgattacccttgtaagttctttcttaatttcaccaatgagttattttatttgaattgacttatttgagcttatctgctgacgtg 217  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||                       
T  395981 tccgttcttcaagaaatgattacccttgtaagttctttcttattttcaccaatgagttattttatttgaattgacttattt------------------- 396061  T
Q  218 actatgtttgcgagagcttatagaaacagtttatgacgtgtccatatatattgggtacaaaatagaagtcaagtttaaaaagtgtcgttaacaagttcca 317  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  396062 actatgtttgcgagagcttatagaaacattttatgacgtgtccatatatgttgggtaccaaatagaagtcaagtttaaaaagtgtcgttaacaagttcca 396161  T
Q  318 ctttcctagaaaattaaattggcaaaaacttggaaggacgaagaaactcgtccttaacattatgttggataggttgtggaccatctatcaaggtggtcca 417  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  396162 ctttactagaaaattaaattggcaaaaacttgaaaggacgaagaaactcgtccttaacattatgttggataggttgtggaccatctatcaaggtggtcca 396261  T
Q  418 cccctagaactttccgtattgatgatg 444  Q
    |||||||||||| ||||||||||||||    
T  396262 cccctagaacttgccgtattgatgatg 396288  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 37941956 - 37941997
Alignment:
Q  222 tgtttgcgagagcttatagaaacagtttatgacgtgtccata 263  Q
    |||||| ||||||||||||||||| |||||||| ||||||||    
T  37941956 tgtttgagagagcttatagaaacaatttatgacatgtccata 37941997  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 29373881 - 29373923
Alignment:
Q  223 gtttgcgagagcttatagaaacagtttatgacgtgtccatata 265  Q
    ||||| |||||||||||||||||| ||||||||||||| ||||    
T  29373881 gtttgagagagcttatagaaacagcttatgacgtgtccgtata 29373923  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 1133077 - 1133045
Alignment:
Q  182 tttgaattgacttatttgagcttatctgctgac 214  Q
    ||||||||||||||||||||||||||| |||||    
T  1133077 tttgaattgacttatttgagcttatctactgac 1133045  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 208
Target Start/End: Original strand, 23983902 - 23983930
Alignment:
Q  180 tatttgaattgacttatttgagcttatct 208  Q
    |||||||||||||||||||||||||||||    
T  23983902 tatttgaattgacttatttgagcttatct 23983930  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 208
Target Start/End: Original strand, 23990597 - 23990625
Alignment:
Q  180 tatttgaattgacttatttgagcttatct 208  Q
    |||||||||||||||||||||||||||||    
T  23990597 tatttgaattgacttatttgagcttatct 23990625  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 209
Target Start/End: Complemental strand, 27984275 - 27984246
Alignment:
Q  180 tatttgaattgacttatttgagcttatctg 209  Q
    ||||||||||||||||||||||||||||||    
T  27984275 tatttgaattgacttatttgagcttatctg 27984246  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 35993351 - 35993392
Alignment:
Q  222 tgtttgcgagagcttatagaaacagtttatgacgtgtccata 263  Q
    |||||| ||||||| ||| |||||||||||||||||||||||    
T  35993351 tgtttgggagagctgatataaacagtttatgacgtgtccata 35993392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 39962270 - 39962311
Alignment:
Q  222 tgtttgcgagagcttatagaaacagtttatgacgtgtccata 263  Q
    |||||| ||||||||||||||||| |||||||| ||||||||    
T  39962270 tgtttgggagagcttatagaaacaatttatgacatgtccata 39962311  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 44458077 - 44458109
Alignment:
Q  182 tttgaattgacttatttgagcttatctgctgac 214  Q
    ||||||||||||||||| |||||||||||||||    
T  44458077 tttgaattgacttatttaagcttatctgctgac 44458109  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 19302484 - 19302516
Alignment:
Q  182 tttgaattgacttatttgagcttatctgctgac 214  Q
    ||||||||||||||||||||||||||| |||||    
T  19302484 tttgaattgacttatttgagcttatctactgac 19302516  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 34036066 - 34036034
Alignment:
Q  182 tttgaattgacttatttgagcttatctgctgac 214  Q
    ||||||||||||||||||||||||||| |||||    
T  34036066 tttgaattgacttatttgagcttatctactgac 34036034  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 35267500 - 35267472
Alignment:
Q  180 tatttgaattgacttatttgagcttatct 208  Q
    |||||||||||||||||||||||||||||    
T  35267500 tatttgaattgacttatttgagcttatct 35267472  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 28578994 - 28578962
Alignment:
Q  182 tttgaattgacttatttgagcttatctgctgac 214  Q
    ||||||||||||||||||||||||||| |||||    
T  28578994 tttgaattgacttatttgagcttatctactgac 28578962  T

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