View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1435_high_22 (Length: 446)
Name: NF1435_high_22
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 96 - 429
Target Start/End: Original strand, 38089050 - 38089383
Alignment:
| Q |
96 |
ttaaaattgctctcgtaacaatcataagcctaaatttattatcttattattggaatgactaggtaagcagacctttatgttaaactttgaattatactt- |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38089050 |
ttaaaattgctctcgtaacaatcataagcctaaaattattatcttattattggaatgactaggtaagcagacctttatgttaaactttgaattatacttc |
38089149 |
T |
|
| Q |
195 |
aacagatgcgcctcttgaaaggaaaataaaataaaataatctaatggaaccccgttgatcgaatctaatggaatcctttgatcaaaggttgggcaaagac |
294 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38089150 |
aacagatgcgcctcttgaa-ggaaaataaaataaaataatctaatggaatcccgttgatcgaatctaatggaatcctttgatcgaaggttgggcaaagac |
38089248 |
T |
|
| Q |
295 |
ttgaagaaagaggaagtaatggtgatgatcaatgtggctcttatatgcaccagtttttctccatccttcatgccatccatgtcggaagttgaaagcatgc |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38089249 |
ttgaagaaagaggaagtaatggtgatgatcaatgtggctcttatatgcaccaatttttctccatccttcatgccatccatgttggaagttgaaagcatgc |
38089348 |
T |
|
| Q |
395 |
ttgaaggaagcacaaaagttcaagaagcggtggca |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
38089349 |
ttgaaggaagcacaaaagttcaagaagcggtggca |
38089383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 38088915 - 38089004
Alignment:
| Q |
7 |
cataggtccataaagtagtaggggctaatttggcttcctaaaactattttttgtttcttttcaaatatcccttgtttgagaatcctatat |
96 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38088915 |
cataggttcataaagtagtaggggctaatttggcttcctaaaactattttttgtttcttttcaaatatcccttgtttgagaatcctatat |
38089004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 421
Target Start/End: Complemental strand, 38092014 - 38091865
Alignment:
| Q |
272 |
ttgatcaaaggttgggcaaagacttgaagaaagaggaagtaatggtgatgatcaatgtggctcttatatgcaccagtttttctccatccttcatgccatc |
371 |
Q |
| |
|
|||||| |||||| ||| ||||||| ||||||| ||||||||||||||| || ||||||||| || || | |||| |||||||| ||| ||| ||| || |
|
|
| T |
38092014 |
ttgatcgaaggtttggcgaagacttcaagaaagtggaagtaatggtgataattaatgtggctattttacgtaccaatttttctctatctctcacgccctc |
38091915 |
T |
|
| Q |
372 |
catgtcggaagttgaaagcatgcttgaaggaagcacaaaagttcaagaag |
421 |
Q |
| |
|
| |||| ||||| ||||||||||||| |||| ||| |||||||||| |
|
|
| T |
38091914 |
cttgtctttagttgtaagcatgcttgaatgaagactaaatgttcaagaag |
38091865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 38091553 - 38091635
Alignment:
| Q |
256 |
aatctaatggaatcctttgatcaaaggttgggcaaagacttgaagaaagaggaagtaatggtgatgatcaatgtggctcttatat |
340 |
Q |
| |
|
|||||||||||| ||||||| | |||| ||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
38091553 |
aatctaatggaaccctttgaacggaggt-gggtgaagacttgaagaaagag-aagtaattgtgatgatcaatgtggctcttatat |
38091635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 280 - 404
Target Start/End: Complemental strand, 19874758 - 19874634
Alignment:
| Q |
280 |
aggttgggcaaagacttgaagaaagaggaagtaatggtgatgatcaatgtggctcttatatgcaccagtttttctccatccttcatgccatccatgtcgg |
379 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||| |||| |||||| ||||||||| || |||||||||| ||| |||||||||||| |
|
|
| T |
19874758 |
aggttgggcaaagacttcaagaaagaggaagtaattttgatgatcgatgttgctcttttatgcaccaattcttctccatccctcaggccatccatgtctt |
19874659 |
T |
|
| Q |
380 |
aagttgaaagcatgcttgaaggaag |
404 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
19874658 |
cagttgtaagcatgcttgaaggaag |
19874634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 280 - 429
Target Start/End: Original strand, 21003724 - 21003873
Alignment:
| Q |
280 |
aggttgggcaaagacttgaagaaagaggaagtaatggtgatgatcaatgtggctcttatatgcaccagtttttctccatccttcatgccatccatgtcgg |
379 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||||| |||||||||| || |||||| |||| ||||||||||||||||| ||| ||| |||||||| |
|
|
| T |
21003724 |
aggttgggcgaagacttcaagaaagaggaggtaatgatgatgatcaacgttgctcttttatgtaccagtttttctccatcgctcaggccctccatgtctt |
21003823 |
T |
|
| Q |
380 |
aagttgaaagcatgcttgaaggaagcacaaaagttcaagaagcggtggca |
429 |
Q |
| |
|
||||| ||||||| ||||||||| ||||| |||||||||| ||||||| |
|
|
| T |
21003824 |
cagttgtaagcatgtttgaaggaaaaacaaatgttcaagaagtggtggca |
21003873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 280 - 429
Target Start/End: Complemental strand, 21008065 - 21007916
Alignment:
| Q |
280 |
aggttgggcaaagacttgaagaaagaggaagtaatggtgatgatcaatgtggctcttatatgcaccagtttttctccatccttcatgccatccatgtcgg |
379 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||| | |||||||||| || |||||| ||||||||||||||||||| || ||| ||| |||||||| |
|
|
| T |
21008065 |
aggttgggcgaagacttcaagaaagaggaggtaacgatgatgatcaacgttgctcttttatgcaccagtttttctccttcgctcaggccttccatgtctt |
21007966 |
T |
|
| Q |
380 |
aagttgaaagcatgcttgaaggaagcacaaaagttcaagaagcggtggca |
429 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||||||| ||||||| |
|
|
| T |
21007965 |
cagttgtaagcatgcttgaaggaaaaacaaatgttcaagaagtggtggca |
21007916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University