View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1435_high_23 (Length: 439)
Name: NF1435_high_23
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 203 - 429
Target Start/End: Original strand, 39608938 - 39609164
Alignment:
| Q |
203 |
gaatcatgaggagtttgacaccgtgggtttgttgaaacttcaaactgaaactttaaagtgtaactttagccaaaatcatggtggctcaccatcattccat |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39608938 |
gaatcatgaggagtttgacaccgtgggtttgttgaaactttaaactgaaactttaaagtgtaactttagccaaaatcatggtggctcaccatcattccat |
39609037 |
T |
|
| Q |
303 |
caaaccaaacatgcactaactttaacttgaaattgtgatttggaatttttaaatccaaacatgatttatagtctcgattttattcaaacatagatcactt |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39609038 |
caaaccaaacatgcactaactttaacttgaaattgtgatttggaatttttaaattcaaacatgatttatagtctcgattttattcaaacatagatcactt |
39609137 |
T |
|
| Q |
403 |
tatagtcaatttaactgttcatctcac |
429 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
39609138 |
tatagtcaatttaactgttcatttcac |
39609164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 39608753 - 39608872
Alignment:
| Q |
18 |
ggatcgactatctattgatcaagcagattacttggcctctgctggttttctttgattttcatgtttggatattcacttttatttacgagaaactaaagtg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39608753 |
ggatcgactatctattgatcaagcagattacttggcctctgctggttttctttgattttcatgtttgcatattcacttttatttacgagaaactaaagtg |
39608852 |
T |
|
| Q |
118 |
attctaggaacataaaattg |
137 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
39608853 |
attctaggaacataaaattg |
39608872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 39609469 - 39609553
Alignment:
| Q |
302 |
tcaaaccaaacatgcactaactttaacttgaaattgtgatttggaatttttaaatccaaacatgatttatagtctcgattttatt |
386 |
Q |
| |
|
|||| ||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39609469 |
tcaatccaaacatgtactaactctaacttgaaattttgatttggaatttttaaatccaaacatgatttatagtctcaattttatt |
39609553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University