View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_29 (Length: 426)
Name: NF1435_high_29
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 414
Target Start/End: Complemental strand, 30373349 - 30372950
Alignment:
| Q |
14 |
gaacacaaaaataatagcagaagacataatagcagatttggtaaataaagtccacattgtcaagaatttaatatgaggtgccaaaagaacctctccaaat |
113 |
Q |
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| T |
30373349 |
gaacacaaaaataatagcagaagacataatagcagatttggtaaataaagtccacattgtcaagaatttaatatgagatgccaaaagaac---tccaaat |
30373253 |
T |
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| Q |
114 |
ctgaatatgacactaaaatagacatatatcatttcaaagcaaaaaagaaaatagtagaagaaaatgttaagaggcttctaaatggtcattcttcgtttca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30373252 |
ctgaatatgacactaaaatagacatatatcatttcaaagcaaaaaagaaaatagtagaagaaaatgttaagaggcttctaaatggtcattcttcgtttca |
30373153 |
T |
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| Q |
214 |
aatcttgcctaacatgttaaaagtcatgcaacatgcagtatacgtacgtattagtattattttttataaatactactctatatatacatacgtagttgaa |
313 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30373152 |
aatgttgcctaacatgttaaaagtcatgcaacatgcagtatacgtacgtattagtattattttttataaatactactctatatatacatacgtagttgaa |
30373053 |
T |
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| Q |
314 |
caattt--nnnnnnnnncataatgaactgcttctggaatactcttttctttggctggattaataattgattgcatatcataatcgattttatatgttaat |
411 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30373052 |
caatttaaaaaaaaaatcataatgaactgcttctggaatactcttttctttggctggattaataattgattgcatatcataatcgattttatatgttaat |
30372953 |
T |
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