View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_30 (Length: 425)
Name: NF1435_high_30
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 407
Target Start/End: Complemental strand, 32178950 - 32178559
Alignment:
| Q |
16 |
aggagttgcgaacggaactgattagaatgaaaatgtatgtttcagatttgcaaaagaatggtcagggcggaacaacgtcgtcttctggagttggaaagga |
115 |
Q |
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| T |
32178950 |
aggagttgcgaacggaactgattagaatgaaaatgtatgtttcagatttgcaaaagaacggtcacggcggaacaacgtcgtcttctgaagttggaaagga |
32178851 |
T |
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| Q |
116 |
agtcaaaaagtcgacattcttttcgtccgtgtcaaagaaattaggtaagctgaatccgttcaagaatggttctaaagatacgtctcatattgaggatgtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32178850 |
agtcaaaaagtcgacattcttttcgtccgtgtcaaagaaattaggtaagctgaatccgttcaagaatggttctaaagatacgtctcatattgaggatgtt |
32178751 |
T |
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| Q |
216 |
ggtgtggatttgacaaagcctagaaggagaaggttctccatttcatagattattttatttttgtaagaaatgaaactgattaattcattaattagtgttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32178750 |
ggtgtggatttgacaaagcctagaaggagaaggttctccatttcatagattattttatttttgtaagaaatgaaactgattaattcattaattagtgttt |
32178651 |
T |
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| Q |
316 |
tattagacgctgtttagcattagttttattttgattgtatttgtgtgtgaagtaagtcctataaaatgcaatttgtttggggtaggaacatc |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32178650 |
tattagacgctgtttagcattagttttattttgattgtatttgtgtgtgaagtaagtcctataaattgcaatttgtttggggtaggaacatc |
32178559 |
T |
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