View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_31 (Length: 422)
Name: NF1435_high_31
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 409
Target Start/End: Original strand, 6083590 - 6083985
Alignment:
| Q |
14 |
agaagtcatgttgcattgcaagagttatctttggcatcaatgtcttacattggcagtgatgacaatgttagctgtggggagtccttggcttctgcattga |
113 |
Q |
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| T |
6083590 |
agaagtcatgttgcattgcaagagttatctttggcatcaatgtcttacattggcagtgatgacaatgttagctgcggggagtccttggcttctgcattga |
6083689 |
T |
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| Q |
114 |
tttcagaatcggagcggtttaaaagtccaaaacatttgggatcattgtcatgccaaagttttggaccttcagatataaaccttatggatgatttcattga |
213 |
Q |
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| T |
6083690 |
tttcagaatcggagcggtttaaaagtccaaaacatttgggatcattgtcatgcaaaagttttggaccttcagatataaaccttatggatgatttcattga |
6083789 |
T |
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| Q |
214 |
aatggaaaagttagcagtggtttctgtcgaaaaagccactgaaatttctcatgcttctgtagaagtaaataatgaaataattggcttctcagagactata |
313 |
Q |
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| T |
6083790 |
aatggaaaagttagcagtggtttctgtcgaaaaagccactgaaatttctcatgcttctgtagaagcaaataatgaaataattggcttctcagagactata |
6083889 |
T |
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| Q |
314 |
ctagatgagatcagtccattgtctgattctgatcatatctcggaattcgctgcatcgaatccggaaacatgttccaatgacatatttaagggtaat |
409 |
Q |
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| T |
6083890 |
ctagatgagatcagtccattgtctgattctgatcatatctcggaattcgctgcatcgaatccggaaacatgttccagtgacatatttaagggtaat |
6083985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 41 - 271
Target Start/End: Complemental strand, 39107438 - 39107208
Alignment:
| Q |
41 |
tctttggcatcaatgtcttacattggcagtgatgacaatgttagctgtggggagtccttggcttctgcattgatttcagaatcggagcggtttaaaagtc |
140 |
Q |
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| T |
39107438 |
tctttggcatcaacgtctgatattggcagtgatgacaaggttagctgtgctgactcctcggcttctgcattgaattcagaatcagagcacttcagaagtg |
39107339 |
T |
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| Q |
141 |
caaaacatttgggatcattgtcatgccaaagttttggaccttcagatataaaccttatggatgatttcattgaaatggaaaagttagcagtggtttctgt |
240 |
Q |
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| T |
39107338 |
gaaaacaaaaggaatcttggtcctgccgaagcattggagcttcagacataaatctcatggatgactttgtcgaaatggaaaaattagcagtggtctctgt |
39107239 |
T |
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| Q |
241 |
cgaaaaagccactgaaatttctcatgcttct |
271 |
Q |
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| T |
39107238 |
tgaaaaagaccctgaaatctctggtgcttct |
39107208 |
T |
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