View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_33 (Length: 404)
Name: NF1435_high_33
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 41988716 - 41989099
Alignment:
| Q |
1 |
ttgattagattaccaaatttatatttttctgaatggttaaggttactca-tgctattgctaactactagatttgaggcaataattattcataaacgacca |
99 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41988716 |
ttgattagattacctaatttatatttttctgaatggttaaggttactcaatgctattgctaactactagatttgaggcaataattattcataaatgacca |
41988815 |
T |
|
| Q |
100 |
acataaaaattgttgtcaatggtcacttcgattcttatgatcttatctgttttagtaccatatagaaagttttgataatactaatttttcctgtttaaat |
199 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41988816 |
acataaaa-ttgttgtcaatggtcacttcgattcttatgatcttatctgttttagtaccatatagaaagttttgataatactaatttttcctgtttaaat |
41988914 |
T |
|
| Q |
200 |
tttgcaccacgttaaatgtattgatattctacctctctaaaatattaacattatgtttaagaatgtcatatttttcttgataaacaagtgnnnnnnntgg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41988915 |
tttgcaccacgttaaatgtattgatattctacctctctaaaatattaacattatgtttaagaatgtcatatttttcttgataaacaagtgaaaaaaatgg |
41989014 |
T |
|
| Q |
300 |
ttgaaaaaagaggtgtgtatctgtcattaatttataagaatccgcacgaattagctgtgggtggaattccaaagttgcatatgtattgt |
388 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41989015 |
ttgaaaaaagaggtgtgtatatgtc----atttataagaatccgcacgaattagctgtgggtggaattccaaagttgcatatgtattgt |
41989099 |
T |
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