View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_36 (Length: 401)
Name: NF1435_high_36
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 15469662 - 15469288
Alignment:
| Q |
18 |
ataccttccaggcttccacaatattaaatgtagccgacaatatgcacaatttttaacaattatagtaaccaattttaaatttagctacatttataggatg |
117 |
Q |
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| T |
15469662 |
ataccttccaggcttccacaattttaaatgtagccgacaatatgcacaatttttaacaattatagtaaccaattttaaatttagctacatttatagaatg |
15469563 |
T |
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| Q |
118 |
caattatagtttcttgcagctctattcaatttttatcataaaaaaggaactctttaagtggtcactgtccttgcctnnnnnnnctgctcactgtcccagt |
217 |
Q |
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| T |
15469562 |
caattatagtttcttgcagctctattcaatttttatcataaaaaaggaactctttaactggtcactgtccttgcctaaaaaaactgctcactgtcccagt |
15469463 |
T |
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| Q |
218 |
tttaaaatgttgaatcaatcacaatgattgaagttagtggaattttcttaaaagaagaggaactggactattagttaaattctttggttcttgttcaaat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15469462 |
tttaaaatgttgaatcaatcacaatgattgaagttagtggaattttcttaaaagaagaggaactggactattagttaaattcttttgttcttgttcaaat |
15469363 |
T |
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| Q |
318 |
aaaaaggttaaattctttagatgaaattcattgtagtatttcccttctttcatctgtacaatagtagagtattat |
392 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||| | ||||||||||||||||| |
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| T |
15469362 |
aaaaaggttaaattctttagatgaaattcattctggtatttcccttctttcatctttccaatagtagagtattat |
15469288 |
T |
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