View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_40 (Length: 394)
Name: NF1435_high_40
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 49070398 - 49070025
Alignment:
| Q |
1 |
tgctcacgcgcttaggtcgcaacttaaaagttttgtgtcactccccaagagagagtgagtaatctctgctcgcgtgcttaagttgcaacttaaagttctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
49070398 |
tgctcacgcgcttaggtcgcaacttaaaagttttgtgtcactccccaagagagagt----actctctgctcgcgtgcttaagttgcaacttaaagttctt |
49070303 |
T |
|
| Q |
101 |
tgtgactccccacgaatgtgttctgctgcttaaccaactaagccacattcattagtccatctaaggtttggggggaaatttaacttttattcaataataa |
200 |
Q |
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|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49070302 |
tgcgactctccacgaatgtgttctgctgcttaaccaactaagccacattcattagtctatctaaggtttggggggaaatttaacttttattcaataataa |
49070203 |
T |
|
| Q |
201 |
gcaaa-cacctatattttcttaaaataaattttgatactacgtctatttctaaatataggaaccctggtttctaaattacaaaagtgaagaaaattggta |
299 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49070202 |
gcaaaacacctatattttcttaaaataaattttgatactacgtctatttctaaatataggaaccctggtttctaaattacaaaagtgaagaaaattggta |
49070103 |
T |
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| Q |
300 |
ccaacatttaaaagttgttaaataattggacaagaattcttaagatggtccttaggggtggagatggtagattgcatg |
377 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49070102 |
ccaacatttaaaagttgttaaatgattggacaagaattcttaagatggtccttaggggtggagatggtagattgcatg |
49070025 |
T |
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