View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_46 (Length: 374)
Name: NF1435_high_46
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 348
Target Start/End: Complemental strand, 34086376 - 34086045
Alignment:
| Q |
13 |
aatatagaggcgagagatagcatagaacaatatctttttgatgaagaaagtcatgggagataatgcacagctatgaacaaacggtcctgttgccaaggcc |
112 |
Q |
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| T |
34086376 |
aatatagaggcgagagatagcatagaacaatatctttttgatgaagaa-gtcatgggagataatgcacagctatgaacaaacggtcctgttgccaaggcc |
34086278 |
T |
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| Q |
113 |
agggccattatgcatcaattttctcagacaacaaacaatttaaggatttttccaatgacaaattgaaacctgctccactcgaatcacaaacacatccttc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34086277 |
agggccattatgcatcaattttctcagacaacaaacaatttaaggatttttccaatgacaaattgaaacctgctccactcgaatcacaaacacatc---c |
34086181 |
T |
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| Q |
213 |
ttatctagtcctcaaaccaaaggagtaaaatagagattgcaagtaaaattataccctcccttcgacgatatctgcgatgaatccacaaaatccctaaaag |
312 |
Q |
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| T |
34086180 |
ttatctagtcctcaaaccaaaggggtaaaatagagattgcaagtaaaattataccctcccttcgacgataactgcgatgaatccacaaaatccctaaaag |
34086081 |
T |
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| Q |
313 |
attgaaacaaacctactatttaccactgacaacacc |
348 |
Q |
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| T |
34086080 |
attgaaacaaacctactatttaccactgacaacacc |
34086045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 13818750 - 13818875
Alignment:
| Q |
13 |
aatatagaggcgagagatagcatagaacaatatctttttgatgaagaaagtcatgggagataatgcacagctatgaacaaacggtcctgttgccaaggcc |
112 |
Q |
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| T |
13818750 |
aatatataggcgagagatagcatagaacaatacctttttgatgaagaa-gccactggagataatgcataactatgaataaacggtcttgttgccaaggcc |
13818848 |
T |
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| Q |
113 |
agggccattatgcatcaattttctcag |
139 |
Q |
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| T |
13818849 |
agtgccattatgcatcaattttctcag |
13818875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 159 - 332
Target Start/End: Complemental strand, 39077114 - 39076944
Alignment:
| Q |
159 |
tttttccaatgacaaattgaaacctgctccactcgaatcacaaacacatccttcttatctagtcctcaaaccaaaggagtaaaatagagattgcaagtaa |
258 |
Q |
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||||| |||| ||| || |||||||||||| ||| |||||||||||||||||| || ||||||||||| || ||| ||| ||||||||| ||||| |
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| T |
39077114 |
ttttttcaatcacagatggaaacctgctccgctcaaatcacaaacacatcctt---atatagtcctcaaaacagaggggtagaatagagatattgagtaa |
39077018 |
T |
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| Q |
259 |
aattataccctcccttcgacgatatctgcgatgaatccacaaaatccctaaaagattgaaacaaacctactatt |
332 |
Q |
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||||| || || || | || || |||||||||||||||| ||||| |||||| ||||||||||||||||||| |
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| T |
39077017 |
aattacacactaccctagaaaatttctgcgatgaatccaccaaatctttaaaagtttgaaacaaacctactatt |
39076944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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