View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_47 (Length: 364)
Name: NF1435_high_47
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_47 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 3160379 - 3160702
Alignment:
| Q |
17 |
atggaaccaaagtaaacaaaaatgacaaacattatcataggtatgtcatttttgttgtatgctcggtagattgttgttccacaacttattgtcaagttga |
116 |
Q |
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| T |
3160379 |
atggaaccaaggtaaacaaaaatgacaaaaattatcataggtatatcatttttgttgtatgcacggtagattgttgttccacaacttattgtcaagttga |
3160478 |
T |
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| Q |
117 |
tggaacataaaaatggcaacatagtttgaaccattttgttcggatgatgcatattagaaagtaatagttgtgatgagtacacattcgtagcttctttttg |
216 |
Q |
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| T |
3160479 |
gggaacataaaaatggtaacatactttgaaccattttgttgggatgatgcatattagaaagtaatagttgcgatggatacacattaatagcttctttctg |
3160578 |
T |
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| Q |
217 |
agtgttcatcaaatatttttgtgtaaacttgctaccttccacgcgtaattgcatatgctagtttttcgaactagatagggaccggaatgtgcggctaaat |
316 |
Q |
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||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| ||||||| |||| ||||| ||||| || ||||||| ||||| |
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| T |
3160579 |
agtgttcatcaaatatttttgtgtaaactggataccctccacgcgtaattgcatatactagtttctcgagtcagata-ggaccagattgtgcggttaaat |
3160677 |
T |
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| Q |
317 |
gtaaatgtgatacgtaatatgttgg |
341 |
Q |
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| T |
3160678 |
ggaaatgtggtacgtaatatgttgg |
3160702 |
T |
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