View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_48 (Length: 363)
Name: NF1435_high_48
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 19206214 - 19205969
Alignment:
| Q |
1 |
cctagttgggatccatcaagtgaaggtggtgaaacacttgtcacgaaataaagatgcttgtaatattattaatatatatattacatggaaagcttctacc |
100 |
Q |
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| T |
19206214 |
cctagttgggatccatcaagtgaaggtggtgaaacacttgtcacgaaataaagatgcttgtaatattattaatat--atattacatggaaagcttctacc |
19206117 |
T |
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| Q |
101 |
aactttgtctgctatagagcaaaattcnnnnnnnnngcaacctttggtgcatgagattaagttgaagctagctcatggaaagcttctattttacctacag |
200 |
Q |
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|||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19206116 |
aactttgtctgctatagagcaaaa-accttcttttttcaacctttggtggatgagattaagttgaagctagctcatggaaagcttctattttacctacag |
19206018 |
T |
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| Q |
201 |
aagacaaagtgcagctggtcaagagtgttgttaacatcatgctcactta |
249 |
Q |
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| T |
19206017 |
aagacaaagtgcagctgggcaagagtgttgttaacatcatgctcactta |
19205969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 12408634 - 12408697
Alignment:
| Q |
5 |
gttgggatccatcaagtgaaggtggtgaaacacttgtcacgaaataaagatgcttgtaatatta |
68 |
Q |
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||||||||||||||||||||||||||||||| |||| |||| ||||| ||||||||||||||| |
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| T |
12408634 |
gttgggatccatcaagtgaaggtggtgaaactcttggcacgcaataataatgcttgtaatatta |
12408697 |
T |
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