View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_51 (Length: 343)
Name: NF1435_high_51
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_51 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 326
Target Start/End: Original strand, 40774164 - 40774475
Alignment:
| Q |
15 |
gacggttgtgatggatcggtccttatctcttcaacggcttacaaccctcacgctgaaaaagacgcagaaatcaacctctccctctcaggggatggatacg |
114 |
Q |
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| T |
40774164 |
gacggttgtgatggatcggtccttatctcttcaacggcttacaaccctcacgctgaaaaagacgcagaaatcaacctctccctctcaggggatggatacg |
40774263 |
T |
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| Q |
115 |
acgtcgttaataaaataaaaaatgcattggaaatagcatgtcctggtgttgtttcatgttctgacattgttgcacaagcaacaagggatcttgttaagat |
214 |
Q |
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| T |
40774264 |
acgtcgttaataaaataaaaaatgcattggaaatagcatgtcctggtgttgtttcatgttctgacattgttgcacaagcaacaagggatcttgttaagat |
40774363 |
T |
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| Q |
215 |
ggttggtggtccattttatcctgtggggttaggaagaaaagatagtcgtgtatcggaagcttcaagaactgaaaaagctcttccaacaacaaaaatgaca |
314 |
Q |
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| T |
40774364 |
ggttggtggtccattttatcctgtggcgttaggaagaaaagatagtcgtgtatcagaagcttcaagaactgaaaaagctcttccaacaacaaaaatgaca |
40774463 |
T |
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| Q |
315 |
atggacgatatt |
326 |
Q |
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| T |
40774464 |
atggacgatatt |
40774475 |
T |
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