View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_53 (Length: 337)
Name: NF1435_high_53
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_53 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 29132164 - 29132483
Alignment:
| Q |
1 |
tgtatcaaactcaattgcaacagctttataaccgctctcgcaagcatcattaagcataccaagccaaggtcctggccttccaacagtgaattcatcaggt |
100 |
Q |
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| T |
29132164 |
tgtatcaaactcaattgcaacggctttataatcgctctcgcaagcatcattaagcataccaagccaaggtcctggccttccaacagtgaattcatcaggt |
29132263 |
T |
|
| Q |
101 |
acaatgatgaaagtaagtccactaccaccaccataatcacttatatcagaagcagtagttaaattattaagctgaaaagaaaaggtggtttgaaaagaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29132264 |
acaatgatgaaagtaagtccactaccaccaccataatcacttatatcagaagcagtagttaaattattaagctgaaaagaaaaggtggtttgaaaagaag |
29132363 |
T |
|
| Q |
201 |
ctggtgttttggtaattggatctaacaaacgaattgggaaggaatataaacctctacctgcttgatctcttatatctgtttcttctgattcatttgggat |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29132364 |
ctggtgttttggtgattggatctaacaaacgaattgggaaggaatataaacctctacctgcttgatgtcttatatctgtttcttctgattcatttgggat |
29132463 |
T |
|
| Q |
301 |
ttgaagtgaacccttttcat |
320 |
Q |
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|||||||||||||||||||| |
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| T |
29132464 |
ttgaagtgaacccttttcat |
29132483 |
T |
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