View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_57 (Length: 331)
Name: NF1435_high_57
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_57 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 135 - 320
Target Start/End: Original strand, 47513725 - 47513910
Alignment:
| Q |
135 |
cagaagagagagtaagcgtgagtgaaaagggagaagagagagtgatgatggtgtatgagattgcagcaggtaggaggcatcatgatcaccatcatcgcag |
234 |
Q |
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| T |
47513725 |
cagaagagagagtaagcgtgagtgaaaagggagaagagagagtgatgatggtgtatgagattgcagcaggtaggaggcatcatgatcaccatcatcgcag |
47513824 |
T |
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| Q |
235 |
tgtgtacaaaaagaacttttttgctaccacctttttgtgctgtggggatgggaattcaacactttctctttctttttctaacctct |
320 |
Q |
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| T |
47513825 |
tgtgtacaaaaagaacttttttgctaccacctttttgtgctgtggggatgggaattcaacactttctctttctttttctaacctct |
47513910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 135 - 320
Target Start/End: Original strand, 50944990 - 50945190
Alignment:
| Q |
135 |
cagaagagagagtaagcgtgagtgaaaagggagaagagagagtgatgatggtgtatgag-----attgcagcaggtaggaggcatcatgatcaccatca- |
228 |
Q |
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| T |
50944990 |
cagaagagagagtaagcgtgagtgaaaagggagaagagagagtggtgatggtgtatgagaatgaattgcagcaggtaggaggcatcatgatcaccatcat |
50945089 |
T |
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| Q |
229 |
-------tcgcagtgtgtacaaaaagaac-ttttttgctacc-acctttttgtgctgtggggatgggaattcaacactttctctttctttttctaacctc |
319 |
Q |
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| T |
50945090 |
cgcagattcgcagtgtgtacaaaaagaactttttttgctacctacctttttgtgctgtggggatgggaattcaacactttctcttcctttttctaacctc |
50945189 |
T |
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| Q |
320 |
t |
320 |
Q |
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| T |
50945190 |
t |
50945190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 47513585 - 47513638
Alignment:
| Q |
1 |
aaacaccacgtttaaggacagacccacatccacacttatttttatccatctcca |
54 |
Q |
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| T |
47513585 |
aaacaccacgtttaaggacagaccaacatccacacttattgttatccatctcca |
47513638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 50944882 - 50944918
Alignment:
| Q |
18 |
acagacccacatccacacttatttttatccatctcca |
54 |
Q |
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| T |
50944882 |
acagaccaacatccacacttattgttatccatctcca |
50944918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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