View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1435_high_60 (Length: 321)

Name: NF1435_high_60
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1435_high_60
NF1435_high_60
[»] chr3 (2 HSPs)
chr3 (16-313)||(36743956-36744258)
chr3 (44-76)||(35722340-35722372)
[»] chr8 (9 HSPs)
chr8 (16-81)||(6392095-6392160)
chr8 (16-81)||(6364472-6364537)
chr8 (16-81)||(6411259-6411324)
chr8 (38-81)||(6264930-6264973)
chr8 (36-81)||(7460671-7460716)
chr8 (16-78)||(6290510-6290572)
chr8 (53-91)||(6458252-6458290)
chr8 (36-81)||(6353599-6353644)
chr8 (36-81)||(6425289-6425334)
[»] chr2 (1 HSPs)
chr2 (38-87)||(42694385-42694434)
[»] chr1 (1 HSPs)
chr1 (68-190)||(36923579-36923701)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 36743956 - 36744258
Alignment:
Q  16 agatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttgggaaatccagataagagtcgagaccttgctcgtccg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36743956 agatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttgggaaatccagataagagtcgagaccttgctcgtccg 36744055  T
Q  116 attctcggaggttcttctaaatttccctatcctcgcaggggaagaacctgcagaaaaccgaccaaaacaggttagttagttagttagttaatctctacgt 215  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36744056 attctcggaggttcttctaaatttccctatcctcgtaggggaagaacctgcagaaaaccgaccaaaacaggttagttagttagttagttaatctctacgt 36744155  T
Q  216 taattgctctcaact-----ttttcttagtaatatataattgaaactttttactaatgaatatatattatttatatgatgattcattaattcacaggttc 310  Q
    |||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  36744156 taattgctctcaactttttcttttcttagtaatatataattgaaactttttactaatgaatatatattatttatatgatgattcattaatttacagattc 36744255  T
Q  311 tgc 313  Q
    |||    
T  36744256 tgc 36744258  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 35722340 - 35722372
Alignment:
Q  44 gacagaatctatgattatgatgtttacaatgat 76  Q
    ||||||||||||||||||||||| |||||||||    
T  35722340 gacagaatctatgattatgatgtctacaatgat 35722372  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 6392160 - 6392095
Alignment:
Q  16 agatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 81  Q
    ||||||||| | | ||||| |||||||||||||||| |||||||||||||| ||||||||||||||    
T  6392160 agatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttggg 6392095  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 6364537 - 6364472
Alignment:
Q  16 agatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 81  Q
    ||||||||| | | ||||| |||||||||| ||||| |||||||||||||| ||||||||||||||    
T  6364537 agatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 6364472  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 6411324 - 6411259
Alignment:
Q  16 agatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 81  Q
    ||||||||| | | ||||| ||| |||||||||||| |||||||||||||| ||||||||||||||    
T  6411324 agatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgatttggg 6411259  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 6264973 - 6264930
Alignment:
Q  38 gaatgggacagaatctatgattatgatgtttacaatgatttggg 81  Q
    |||||||||||| | |||||||||||||||||||||||||||||    
T  6264973 gaatgggacagagtttatgattatgatgtttacaatgatttggg 6264930  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 7460716 - 7460671
Alignment:
Q  36 aggaatgggacagaatctatgattatgatgtttacaatgatttggg 81  Q
    |||||||||||||||| |||||||||||||| |||||||| |||||    
T  7460716 aggaatgggacagaatatatgattatgatgtctacaatgacttggg 7460671  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 6290572 - 6290510
Alignment:
Q  16 agatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgattt 78  Q
    ||||||||||| | ||||  |||||||||| ||||| |||||||| ||||| |||||||||||    
T  6290572 agatggaacaggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaatgattt 6290510  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 6458290 - 6458252
Alignment:
Q  53 tatgattatgatgtttacaatgatttgggaaatccagat 91  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  6458290 tatgattatgatatttataatgatttgggaaatccagat 6458252  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 6353644 - 6353599
Alignment:
Q  36 aggaatgggacagaatctatgattatgatgtttacaatgatttggg 81  Q
    |||||||||| ||||| |||||||| ||||| ||||||||||||||    
T  6353644 aggaatgggaaagaatatatgattacgatgtctacaatgatttggg 6353599  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 6425334 - 6425289
Alignment:
Q  36 aggaatgggacagaatctatgattatgatgtttacaatgatttggg 81  Q
    |||||||||| || ||||||||||| ||||| ||||||||||||||    
T  6425334 aggaatgggaaaggatctatgattacgatgtctacaatgatttggg 6425289  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 42694434 - 42694385
Alignment:
Q  38 gaatgggacagaatctatgattatgatgtttacaatgatttgggaaatcc 87  Q
    |||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  42694434 gaatgggaaagaatctatgattatgatgtctacaatgatttaggaaatcc 42694385  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 190
Target Start/End: Original strand, 36923579 - 36923701
Alignment:
Q  68 tacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatcctcgcaggggaagaacctgca 167  Q
    |||||||||||||||||||| |||||  |||  || | | ||||||| ||||| ||||| ||| || ||| ||| || |||||||||||||||||  |||    
T  36923579 tacaatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagggtctgctgaatatccttaccctcgcaggggaagaactggca 36923678  T
Q  168 gaaaaccgaccaaaacaggttag 190  Q
    || ||||  ||||| ||||||||    
T  36923679 gagaacctgccaaatcaggttag 36923701  T

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