View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_61 (Length: 317)
Name: NF1435_high_61
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_61 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 41 - 307
Target Start/End: Complemental strand, 2906803 - 2906535
Alignment:
| Q |
41 |
atatatggtataaagtttattaatcacgg-tccagtgcaagtggttggtgcgcaatgtgaacaaatgttgtaaaaatcgaatattatgatgatttttact |
139 |
Q |
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| T |
2906803 |
atatatggtataaagttcaataatcatgggtccagtacaagtggttggtgcgtaatgtgaacaaatgtagtaaaaatcggatattaggatgatttttact |
2906704 |
T |
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| Q |
140 |
cgtaaaaaatgtatcgagttagttaactatgatttttt-attcacacattaatccaaaaataaattgtcattaacagattaataccgtgtccaagattat |
238 |
Q |
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| T |
2906703 |
cgtaaaaaatgtatcgagttaattaactatgatttttttattcacatattaatataaaaataaattgtcattaacagattaataccgtgtccaagattat |
2906604 |
T |
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| Q |
239 |
gaatataaccctagtcattccagcactgctccttatgatatgcaagatggatagaggcagagaaagaat |
307 |
Q |
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| T |
2906603 |
gaatataaccctagtcattccagcactgctccttatgatatgcaagatggatagaggcagagaaagaat |
2906535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 2907016 - 2906864
Alignment:
| Q |
18 |
aataaacctagcattacctgcatatatatggtataaagtttattaatcacggtccagtgcaagtggttggtgcgcaatgtgaacaaatgttgtaaaaatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2907016 |
aataaacctagcattacctgcatatatatggtataaagtttattaatcacggtccagtgcaagtggttggtgcgcaatgtgaacaaatgtcataaaaatc |
2906917 |
T |
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| Q |
118 |
gaatattatgatgatttttactcgtaaaaaatgtatcgagttagttaactatg |
170 |
Q |
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| T |
2906916 |
gaatattacgatgatttttactcgtaaaaaatgtatccagttagttaactatg |
2906864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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