View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1435_high_71 (Length: 293)
Name: NF1435_high_71
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_71 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 2760252 - 2760350
Alignment:
| Q |
1 |
gaaaaggaagagtaacccgatgcagtcgacgcatgtgttgtctgatagnnnnnnnnnnnntgctatgtcaatgaaaaggaatgtaatgtataacaagaa |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2760252 |
gaaaaggaagagtaacccgatgcagtcgacgcatgtgttatctgatagaaaaagaaaaaaagctatgtcaatgaaaaggaatgtaatgtataacaagaa |
2760350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 291
Target Start/End: Complemental strand, 33488119 - 33488089
Alignment:
| Q |
261 |
gtccctatatataagacctttttgtcaaaat |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33488119 |
gtccctatatataagacctttttgtcaaaat |
33488089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 14699740 - 14699708
Alignment:
| Q |
261 |
gtccctatatataagacctttttgtcaaaatta |
293 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
14699740 |
gtccctatatataagacccttttgtcaaaatta |
14699708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 29285786 - 29285818
Alignment:
| Q |
261 |
gtccctatatataagacctttttgtcaaaatta |
293 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
29285786 |
gtccctatatataagacccttttgtcaaaatta |
29285818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University