View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_77 (Length: 284)
Name: NF1435_high_77
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_77 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 96 - 273
Target Start/End: Complemental strand, 53961328 - 53961151
Alignment:
| Q |
96 |
attttagaatatgtacaatatgacatagaaatactcaattatctttacacgctcttttctagatgatgaaaagctaatatttatcgtcattatttaacaa |
195 |
Q |
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| T |
53961328 |
attttagaatatgtacactatgacataaaaatactcaattatctttacacgctcttttctagatgatgaaaagctaatatttatcgtcattatttaacaa |
53961229 |
T |
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| Q |
196 |
gtatgcctgctaatcaagcatttgttattctaatgaaaaatgcttaatcataatgatacttagctgcctttcattcat |
273 |
Q |
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| T |
53961228 |
gtatgcctgctaatcaagcatttgttattctaatgaaaaatgcttaatcataatgatacttagctgcctttcattcat |
53961151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 53961587 - 53961503
Alignment:
| Q |
20 |
gctggcttgtacatgaacgtaatgagcacgcacgccttcaagcaaaaaccccactagtcttgtatccaatatctatattttagaa |
104 |
Q |
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| T |
53961587 |
gctggcttgtacatgaacgtaatgagcacgcacgccttcaagcaaaaaccccactagtcttgtatccaatatctatattttagaa |
53961503 |
T |
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