View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_80 (Length: 279)
Name: NF1435_high_80
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_80 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 24068991 - 24069238
Alignment:
| Q |
18 |
agaaattaaatccatgaagatgcaaaggatgactctcagctcccaaaatgcttgtatcctgcaatataacctgaactctagtgttatatggtatcaccac |
117 |
Q |
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| T |
24068991 |
agaaattaaatccatgaagatgcaaaggatgactctcagctcccaaaatgcttgtatcctgcaatataacctgaactctagtgttatatggtatcaccac |
24069090 |
T |
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| Q |
118 |
tgtctttgttccattactaaccaaagtattgtttggaggtgttcctgtataattaaacggccttaacggtacaactggaaaatccgttgtaaaaccatta |
217 |
Q |
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| T |
24069091 |
tgtctttgttccattactaaccaaagtattgtttggaggtgttcctgtataattaaacggccttaacggtacaaccggaaaatccgttgtaaaaccatta |
24069190 |
T |
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| Q |
218 |
ttagctccaaagaaatgttgttgaagaagtgctatagaaggtaaagca |
265 |
Q |
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| T |
24069191 |
ttagctccaaagaaatgttgttgaagaagtgctatagaaggtaaagca |
24069238 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 22635472 - 22635537
Alignment:
| Q |
18 |
agaaattaaatccatgaagatgcaaaggatgactctcagctcccaaaatgcttgtatcctgcaata |
83 |
Q |
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|||| ||||| |||||||||||||| ||||||||||||||||| | ||| |||||||||||||||| |
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| T |
22635472 |
agaagttaaaaccatgaagatgcaatggatgactctcagctccaagaatacttgtatcctgcaata |
22635537 |
T |
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