View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_high_99 (Length: 250)
Name: NF1435_high_99
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_high_99 |
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| [»] scaffold0063 (1 HSPs) |
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| [»] scaffold0263 (1 HSPs) |
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| [»] scaffold1364 (1 HSPs) |
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| [»] scaffold0351 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 6278118 - 6278353
Alignment:
| Q |
1 |
caagtggtatttataga-aaaataacataacatgtaattctgttgtcctataacatcctgacttacaaaattaatccacatgtttatttagatgtgccat |
99 |
Q |
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| T |
6278118 |
caagtggtatttatagacaaaataacataacaggtaattctgttgtcctataacatcctgacttacaaaattaatccacatgtttatttagatgtgccat |
6278217 |
T |
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| Q |
100 |
ttttcctaacaaatccacatgtttgtattcaagatcaaagttaatgtattaaaaacaaaatatatttattattgttggtcctacgaaggtttaatttcag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| |
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| T |
6278218 |
ttttcctaacaaatccacatgtttgtattcaagatcaaagttaatgtattaaaaacaaaatataattattattgttggtactacgaaggtttaatgtcag |
6278317 |
T |
|
| Q |
200 |
taacttacagtgttagaaaccacactggaaacccat |
235 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6278318 |
taacttacagtgttagaaaccacactggaaacccat |
6278353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 235
Target Start/End: Original strand, 6293291 - 6293450
Alignment:
| Q |
73 |
atccacatgtttatttagatgtgccatttttcctaacaaatccacatgtttgtattcaagatcaaagttaatgtattaaaaacaaaatatatttattatt |
172 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |||| |||||| |
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| T |
6293291 |
atccacatgtttatttagatgtatcatttttcctaacaaatccaaatgtttatattcaagatcaaagctaatgtattaaaaacaaaaaatatcaattatt |
6293390 |
T |
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| Q |
173 |
gttggtcctacgaaggtttaatttcagtaacttacagtgttagaaaccacactggaaacccat |
235 |
Q |
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| T |
6293391 |
gctggtcctaccacggtttaatgtcaataactt--agt-ttagaaatcacacttgaaacccat |
6293450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 69 - 235
Target Start/End: Original strand, 34493 - 34659
Alignment:
| Q |
69 |
attaatccacatgtttatttagatgtgccatttttcctaacaaatccacatgtttgtattcaagatcaaagttaatgtattaaaaacaaaatatatttat |
168 |
Q |
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||||||| ||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
34493 |
attaatcgacatgtttatttagatggaccatttatcctaacaaatccacatgtttatattcaagaacaaagctaatgtattaaaaacaaaatatatttat |
34592 |
T |
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| Q |
169 |
tattgttggtcctacgaaggtttaatttcagtaacttacagtgttagaaaccacactggaaacccat |
235 |
Q |
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| T |
34593 |
tattgttggtcctacgacagtttattgtcaataatttagagggttagaaaccacactggaaacccat |
34659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 72 - 237
Target Start/End: Original strand, 21093 - 21256
Alignment:
| Q |
72 |
aatccacatgtttatttagatgtgccatttttcctaacaaatccacatgtttgtattcaagatcaaagttaatgtattaaaaacaaaatatatttattat |
171 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| || | || |||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
21093 |
aatccacatgtttatttagatgtaccatttttcctaacaaatccacaagtatataatcaagaacaaagttaatgtattaaaaacaaaatataattattat |
21192 |
T |
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| Q |
172 |
tgttggtcctacgaaggtttaatttcagtaacttacagtgttagaaaccacactggaaacccatat |
237 |
Q |
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| T |
21193 |
tgttggtcctacgacagtttaatgtcaataattt--agtgttagaaaccacactggaaatccatat |
21256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1364 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold1364
Description:
Target: scaffold1364; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 82 - 235
Target Start/End: Complemental strand, 229 - 76
Alignment:
| Q |
82 |
tttatttagatgtgccatttttcctaacaaatccacatgtttgtattcaagatcaaagttaatgtattaaaaacaaaatatatttattattgttggtcct |
181 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
229 |
tttatttagatgtaccatttttcctaacaaatccacaagtttaaattcaacaacaaagttaatgtattaaaaacaaaatatatttattattgttggtccg |
130 |
T |
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| Q |
182 |
acgaaggtttaatttcagtaacttacagtgttagaaaccacactggaaacccat |
235 |
Q |
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|||| ||||||| ||| ||| ||| |||||||||||| |||||||||| |||| |
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| T |
129 |
acgacagtttaatgtcaataatttagagtgttagaaacaacactggaaaaccat |
76 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0351
Description:
Target: scaffold0351; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 82 - 235
Target Start/End: Complemental strand, 11322 - 11169
Alignment:
| Q |
82 |
tttatttagatgtgccatttttcctaacaaatccacatgtttgtattcaagatcaaagttaatgtattaaaaacaaaatatatttattattgttggtcct |
181 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11322 |
tttatttagatgtaccatttttcctaacaaatccacaagtttaaattcaacaacaaagttaatgtattaaaaacaaaatatatttattattgttggtccg |
11223 |
T |
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| Q |
182 |
acgaaggtttaatttcagtaacttacagtgttagaaaccacactggaaacccat |
235 |
Q |
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|||| ||||||| ||| ||| ||| |||||||||||| |||||||||| |||| |
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| T |
11222 |
acgacagtttaatgtcaataatttagagtgttagaaacaacactggaaaaccat |
11169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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