View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1435_low_1 (Length: 816)
Name: NF1435_low_1
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_1 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0012 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0007 (Bit Score: 772; Significance: 0; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 772; E-Value: 0
Query Start/End: Original strand, 1 - 807
Target Start/End: Original strand, 75032 - 75838
Alignment:
| Q |
1 |
ccattgacagatcctcaatgtcctctaagagtgatcatcaatggcaatacatttttctatacatatgatgagaagatacgtatgtcacgactgaaaatgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
75032 |
ccattgacagatcctcaatgtcctctaagagtgatcatcaatggcaatacatttttctatacatatgatgagaagatacgtatgtgacgactgaaaatgt |
75131 |
T |
|
| Q |
101 |
atcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
75132 |
atcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttgg |
75231 |
T |
|
| Q |
201 |
atccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgtta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
75232 |
atccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgtta |
75331 |
T |
|
| Q |
301 |
cgctcgggatgttgaagtaagcatatcattcattttacgcaaattgtaacaaagctttcttcttgaagtttagaatgctaatttgtttcattattttatg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
75332 |
cgctcgggatgttgaagtaagcatatcattcattttacgcaaattgtaacaaagctttcttcttgaagtttagaatgctaatttgtttcattattttatg |
75431 |
T |
|
| Q |
401 |
atagtttttaccatgtgttcacaattataggctggactgtataatctttatgtaacttggtttcgtaatgcaggtaaaagagagcatcggtcagtctttt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
75432 |
atagtttttaccatgtgttcacaattataggctggactgtataatctttatgtaacttggtttcgtaatgcaggtaaaagagagcatcggtcagtctttt |
75531 |
T |
|
| Q |
501 |
ataaaatcaacccaaacaaagaattcctcatcttttgggaaaaccaaccaaaaccataaaaattcctcatctttgccagatctatagttaatgtgactca |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
75532 |
ataaaatcaacccaaacaaagaattcctcatcttttgggaaaaccaaccaaaaccataaaaattcctcatctttgccagatctatagttaatgtgactca |
75631 |
T |
|
| Q |
601 |
ctcatattctgttctgacaaaagaattctaatctcaaaagaggggctcttgcaaaagagtttgattttgcannnnnnnnnaaatgtttggtagaaaaata |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
75632 |
ctcatattctgttctgacaaaagaattctaatctcaaaagaggggctcttgcaaaagagtttgattttgcatttttttttaaatgtttggtagaaaaata |
75731 |
T |
|
| Q |
701 |
taatttgtatttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctcaca |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
75732 |
taatttgtatttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctcaca |
75831 |
T |
|
| Q |
801 |
ggttctg |
807 |
Q |
| |
|
|||||| |
|
|
| T |
75832 |
tgttctg |
75838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 110 - 403
Target Start/End: Original strand, 618871 - 619164
Alignment:
| Q |
110 |
atctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccatt |
209 |
Q |
| |
|
|||||||||||||| ||| | | | ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||| |
|
|
| T |
618871 |
atctttttcatatgcaaatgaagtacttcaatgataatatggacaaagcacttttagaaaataagtggaatcatgcagaggttgactttggattcccatt |
618970 |
T |
|
| Q |
210 |
catgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgttacgctcggga |
309 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||||||| |||||||||| | |||||||||||||||||| | ||||| |
|
|
| T |
618971 |
catgtatagtggaatccatgtattggaagagaaaagtaacatgaaagatattcgattcagtaacccagagattgatgctaacattgtgttacacccggga |
619070 |
T |
|
| Q |
310 |
tgttgaagtaagcatatcattcattttacgcaaattgtaacaaagctttcttcttgaagtttagaatgctaatttgtttcattattttatgata |
403 |
Q |
| |
|
|||| ||||||| | |||||||||||||| |||||||| | ||||||||||||||| ||| ||||||| |||||||||| || ||||| ||||| |
|
|
| T |
619071 |
tgttaaagtaagtacatcattcattttacccaaattgtcataaagctttcttcttgtagtgtagaatgttaatttgtttaataattttttgata |
619164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 1e-74; HSPs: 19)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 27 - 344
Target Start/End: Complemental strand, 29689393 - 29689073
Alignment:
| Q |
27 |
aagagtgatcatcaatggcaatacatttttctatacatatgatgagaagatacgtatgt---cacgactgaaaatgtatcatttaaatctttttcatatg |
123 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||| ||| | |||||| || || |||||| | | | |||||||| |||||||||||||| |
|
|
| T |
29689393 |
aagagtgatcatcaacgacaatacatttttctatacacatggtaggaagattgataggtgttcacgaccggacacatatcatttgcatctttttcatatg |
29689294 |
T |
|
| Q |
124 |
aaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccattcatgtatagtggaa |
223 |
Q |
| |
|
|| |||| | ||||| | || |||||| |||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||| |||||||| |
|
|
| T |
29689293 |
caagtggaatacttcaatggtaatatggataaagcacttttagaaaataaatggaaccatgcagaggttgactttggattcccattcatgtttagtggaa |
29689194 |
T |
|
| Q |
224 |
tccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgttacgctcgggatgttgaagtaagca |
323 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||||||||| |||||||||| ||||||| | |||||||||||||||||| |||||||| |||||||||| | |
|
|
| T |
29689193 |
tccatgtattgaaagagaagagtaacatgaaggatattagattcaccaatccagagaatgatgctaacattgtgttacactcgggattttgaagtaagta |
29689094 |
T |
|
| Q |
324 |
tatcattcattttacgcaaat |
344 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
29689093 |
tatcattcattttacccaaat |
29689073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 97 - 338
Target Start/End: Complemental strand, 29718503 - 29718259
Alignment:
| Q |
97 |
atgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgact |
196 |
Q |
| |
|
||||||||||| |||||||||||||| ||| ||| || ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || | | |
|
|
| T |
29718503 |
atgtatcatttgcatctttttcatatgcaaacggagaacttcaatgataatatggacaaagcacttttagaaaataagtggaaccatgcagagatttatt |
29718404 |
T |
|
| Q |
197 |
ttgga---tccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacat |
293 |
Q |
| |
|
|||| || ||||||||||||||||| ||||| |||||||||| |||| ||||||| |||||||||||||||||||||||| || | |||||||||| |
|
|
| T |
29718403 |
ttggtgtctctgcattcatgtatagtggagtccatgtattgaaagaaaaaaatagcatggaggatattcgattcaccaacccagcgaatgatgctaacat |
29718304 |
T |
|
| Q |
294 |
tgtgttacgctcgggatgttgaagtaagcatatcattcattttac |
338 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29718303 |
tgtgttacactcgggatgttgaagtaagtatatcattcattttac |
29718259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 97 - 292
Target Start/End: Complemental strand, 29767296 - 29767101
Alignment:
| Q |
97 |
atgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgact |
196 |
Q |
| |
|
||||||||||| |||||||||||||| ||| |||| | ||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
29767296 |
atgtatcatttgcatctttttcatatgcaaatggaatacttcaatgataatatggacaaggcacttttagaaaataaatggaaccatgcagaggttgact |
29767197 |
T |
|
| Q |
197 |
ttggatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaaca |
292 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
29767196 |
ttggattcccattcatgtttagtggaatccatgtattgaaagagaaaagtagcatgaaagatattcgattcaccaacccagagaatgatgctaaca |
29767101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 29471870 - 29472125
Alignment:
| Q |
20 |
gtcctctaagagtgatcatcaatggcaatacatttttctatacatatgatgagaagatacgtatgtcacgactgaaaatgtatcatttaaatctttttca |
119 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||| ||| ||| || | |||| | |||| | || |||||||| || |||||||||| |
|
|
| T |
29471870 |
gtcctgtaagagtgatcatcaatggtgatacatttttctataggcatggtgaaaataaacgtttatcaccag---aagtgtatcatctacatctttttca |
29471966 |
T |
|
| Q |
120 |
tatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccattcatgtatagt |
219 |
Q |
| |
|
|||| ||| ||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||| |
|
|
| T |
29471967 |
tatgcaaatggaaaaattgaataataatatggacaaagcacttttagaaaataagtggaaccatgcagaggttgactttgggttcccattcatgtatagt |
29472066 |
T |
|
| Q |
220 |
ggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccaga |
278 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
29472067 |
ggaatccatgtattgaaaaagaaaagtaacatgaaggatattcaattcaccaacccaga |
29472125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 27 - 295
Target Start/End: Complemental strand, 29662935 - 29662668
Alignment:
| Q |
27 |
aagagtgatcatcaatggcaatacatttttctatacatatgatgagaagatacgtatgtcacgactgaaaatgtatcatttaaatctttttcatatgaaa |
126 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||| || || ||||| ||| |||||||| | | ||| |||||||||| |||||||||||||| || |
|
|
| T |
29662935 |
aagagtggtcatcaatggatatacatttgtctataaatgtggtgagattctacctatgtcactgcgggaaacgtatcatttacatctttttcatatgcaa |
29662836 |
T |
|
| Q |
127 |
agggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccattcatgtatagtggaatcc |
226 |
Q |
| |
|
| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | || ||||||||| |
|
|
| T |
29662835 |
actgaaaaattcaatgatgatatggacaaagcacttttagaaaataagtggaaccatgcagaggttgactttggattcccattccagaat-gtggaatcc |
29662737 |
T |
|
| Q |
227 |
atatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattg |
295 |
Q |
| |
|
|| |||||||||||||||||| |||||| ||||||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
29662736 |
atgtattgaaagagaaaagtaacatgaatgatattcgattcaccaacccagagaatgatgctaatattg |
29662668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 110 - 333
Target Start/End: Complemental strand, 29711864 - 29711646
Alignment:
| Q |
110 |
atctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccatt |
209 |
Q |
| |
|
||||||||||| || ||| |||||| ||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| || |
|
|
| T |
29711864 |
atctttttcatttgcaaatggaaaatttcaatgataatatagacaaagcacttttagaaaataagtggaaccatgcagaggttgactttggattcccttt |
29711765 |
T |
|
| Q |
210 |
catgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgttacgctcggga |
309 |
Q |
| |
|
| | |||||||||||||| |||||||||||||||||| |||||| || |||| |||||||| |||| | |||| ||||||||||||| ||||||| |
|
|
| T |
29711764 |
ccagaatagtggaatccatgtattgaaagagaaaagtaacatgaaagacattcaattcacca-----gagaatgatgccaacattgtgttacactcggga |
29711670 |
T |
|
| Q |
310 |
tgttgaagtaagcatatcattcat |
333 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
29711669 |
tgttgaagtaagtatatcattcat |
29711646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 99 - 344
Target Start/End: Complemental strand, 29800020 - 29799774
Alignment:
| Q |
99 |
gtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgacttt |
198 |
Q |
| |
|
||||||||| ||||||| |||||| ||| |||||| ||||| |||| |||||| ||| ||||||||||||||||||||||||||||| || || ||||| |
|
|
| T |
29800020 |
gtatcatttgcatcttttccatatgcaaacggaaaacttcaatgataatatggataaatcacttttagaaaataagtggaaccatgcaaaggtttacttt |
29799921 |
T |
|
| Q |
199 |
ggatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagacta-atgctaacattgtg |
297 |
Q |
| |
|
|||| | |||| | |||||||||||| ||||||||| ||||||| |||||||||||||||||||| | |||||| || | |||||||||||||| |
|
|
| T |
29799920 |
ggattcaaattccataaaagtggaatccatgtattgaaagctaaaagtaacatgaaggatattcgattcagcgacccagggagttgatgctaacattgtg |
29799821 |
T |
|
| Q |
298 |
ttacgctcgggatgttgaagtaagcatatcattcattttacgcaaat |
344 |
Q |
| |
|
|||| |||||||||||| |||||| |||||||||||||||| ||||| |
|
|
| T |
29799820 |
ttacactcgggatgttgtagtaagtatatcattcattttacccaaat |
29799774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 99 - 344
Target Start/End: Complemental strand, 28487608 - 28487361
Alignment:
| Q |
99 |
gtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgacttt |
198 |
Q |
| |
|
||||||||| ||||||| |||||| ||| |||||| ||||| |||| |||||| ||| ||||||||||||||||||||||||||||| || || ||||| |
|
|
| T |
28487608 |
gtatcatttgcatcttttccatatgcaaacggaaaacttcaatgataatatggataaatcacttttagaaaataagtggaaccatgcaaaggtttacttt |
28487509 |
T |
|
| Q |
199 |
ggatccccattcatgtatagtggaatccatatattgaaagag-aaaagtagcatgaaggatattcgattcaccaacccagagacta-atgctaacattgt |
296 |
Q |
| |
|
|||| | |||| | |||||||||||| |||||||||| ||||||| |||||||||||||||||||| | |||||| || | ||||||||||||| |
|
|
| T |
28487508 |
ggattcaaattccataaaagtggaatccatgtattgaaagactaaaagtaacatgaaggatattcgattcagcgacccagggagttgatgctaacattgt |
28487409 |
T |
|
| Q |
297 |
gttacgctcgggatgttgaagtaagcatatcattcattttacgcaaat |
344 |
Q |
| |
|
||||| |||||||||||| |||||| |||||||||||||||| ||||| |
|
|
| T |
28487408 |
gttacactcgggatgttgtagtaagtatatcattcattttacccaaat |
28487361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 100 - 347
Target Start/End: Complemental strand, 29755789 - 29755546
Alignment:
| Q |
100 |
tatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttg |
199 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||| ||| || ||||| |
|
|
| T |
29755789 |
tatcatttgcatctttttcatatgcaaatggaaaacttcaatgataatatggacaaagcactttcagaaaataagtggaaccatgcggaggttctctttg |
29755690 |
T |
|
| Q |
200 |
gatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgtt |
299 |
Q |
| |
|
||| | |||| | | |||||||||||| ||||||||||||||| || | |||||||||||||||||||||| ||||||| | ||||||||||||| | |
|
|
| T |
29755689 |
gattcaaattccttaaaagtggaatccatgtattgaaagagaaaattaacttgaaggatattcgattcaccaatccagagaatgatgctaacattgtaat |
29755590 |
T |
|
| Q |
300 |
acgctcgggatgttgaagtaagcatatcattcattttacgcaaattgt |
347 |
Q |
| |
|
| ||||| | ||||||||| ||||||||||||| || |||||||| |
|
|
| T |
29755589 |
-cactcgg---ggtgaagtaagtatatcattcatttgacccaaattgt |
29755546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 26 - 343
Target Start/End: Complemental strand, 29671502 - 29671188
Alignment:
| Q |
26 |
taagagtgatcatcaatggcaatacatttttctatacatatgatgagaagatacgtatg---tcacgactgaaaatgtatcatttaaatctttttcatat |
122 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||| ||| ||| | |||||| ||| | |||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
29671502 |
taagagtgatcatcaatggaaatacatttatctacacagatggtttgaagatgggtacgaaatcaccgctgaatatgtatcatttgcatctttttcatat |
29671403 |
T |
|
| Q |
123 |
gaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccattcatgtatagtgga |
222 |
Q |
| |
|
||||| |||||| || || |||| |||||| |||| |||||| ||||||| |||||||||||||||| |||| ||||||| |||||| | | |||||| |
|
|
| T |
29671402 |
gaaaatggaaaactttaatgataatatggaaaaagtactttttgaaaatatgtggaaccatgcagaggttgattttggattaccattccagaaaagtgga |
29671303 |
T |
|
| Q |
223 |
atccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgttacgctcgggatgttgaagtaagc |
322 |
Q |
| |
|
|| ||| ||| |||||||||||||| ||||||||||||| |||||||||| |||||| | | | || | |||| || |||||||||||||||| |
|
|
| T |
29671302 |
attcatgtatcgaaagagaaaagtaacatgaaggatattagattcaccaatccagag------gttgattttattttactctagggatgttgaagtaagt |
29671209 |
T |
|
| Q |
323 |
atatcattcattttacgcaaa |
343 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
29671208 |
atatcattcattttacccaaa |
29671188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 29741397 - 29741318
Alignment:
| Q |
163 |
ttagaaaataagtggaaccatgcagagcttgactttggatccccattcatgtatagtggaatccatatattgaaagagaa |
242 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
29741397 |
ttagaaaataagtggaaccatgcagaggttgactttggattcccgttcatgtatagcggaatccatgtattgaaagagaa |
29741318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 233 - 438
Target Start/End: Complemental strand, 29704953 - 29704744
Alignment:
| Q |
233 |
tgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaa----tgctaac-attgtgttacgctcgggatgttgaagtaagcatatc |
327 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| |||||||| | | | ||||||| |||||||||| | |||||||||||||| ||||| |
|
|
| T |
29704953 |
tgaaagagaaaagtaacatgaaggatatttgattcagtaacccagaaaattaacgatgctaaccattgtgttacagccaagatgttgaagtaagtatatc |
29704854 |
T |
|
| Q |
328 |
attcattttacgcaaattgtaacaaagctttcttcttgaagtttagaatgctaatttgtttcattattttatgatagtttttaccatgtgttcacaatta |
427 |
Q |
| |
|
|||||||||||| ||||||| | ||| ||| |||| || | | || || |||||||||||| ||||||||||||| | || | ||||||||||||||| |
|
|
| T |
29704853 |
attcattttacg-aaattgtcataaatcttgcttcctgtaatgtaaaaaattaatttgtttcactattttatgatagatctttctatgtgttcacaatta |
29704755 |
T |
|
| Q |
428 |
taggctggact |
438 |
Q |
| |
|
|||| |||||| |
|
|
| T |
29704754 |
taggttggact |
29704744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 710 - 797
Target Start/End: Complemental strand, 28484766 - 28484679
Alignment:
| Q |
710 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctc |
797 |
Q |
| |
|
||||||||||| |||||||||||||| | || || |||||||| || |||||||| || ||| ||||||||||| ||||||||||| |
|
|
| T |
28484766 |
tttagaatactcctttctttctagattgaggataacaaagggatatactaactgcacttcattcattttgtattttcttactattctc |
28484679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 723 - 806
Target Start/End: Complemental strand, 29715238 - 29715155
Alignment:
| Q |
723 |
tttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctcacaggttct |
806 |
Q |
| |
|
|||||||||||||| |||| || |||||||| || |||||||| || ||| ||||||||||| ||||||||||| || ||||| |
|
|
| T |
29715238 |
tttctttctagattgacgataataaagggatatactaactgcacttcattcattttgtattttcttactattctcccatgttct |
29715155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 710 - 797
Target Start/End: Complemental strand, 29797178 - 29797091
Alignment:
| Q |
710 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctc |
797 |
Q |
| |
|
||||||||||| |||||||||||||| | || || |||||||| || |||||||| || ||| ||||||||||| ||||||||||| |
|
|
| T |
29797178 |
tttagaatactcctttctttctagattgaggataacaaagggatatactaactgcacttcattcattttgtattttcttactattctc |
29797091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 791
Target Start/End: Complemental strand, 28500489 - 28500408
Alignment:
| Q |
710 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttact |
791 |
Q |
| |
|
||||||||||| | |||||||||||| ||||| ||||||||||||| ||||| || || ||| ||||||||||| ||||| |
|
|
| T |
28500489 |
tttagaatactcctctctttctagattgacgactagaaagggatttactaactacacttcattcattttgtattttcttact |
28500408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 741 - 806
Target Start/End: Complemental strand, 29708079 - 29708014
Alignment:
| Q |
741 |
acaagaaagggatttattaactgcattttatttcttttgtattttgttactattctcacaggttct |
806 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||| ||||||||||| ||| |||||||||| ||||| |
|
|
| T |
29708079 |
acaagaaatggatttactaactgcactttattcattttgtattttcttagtattctcacatgttct |
29708014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 791
Target Start/End: Complemental strand, 29812900 - 29812819
Alignment:
| Q |
710 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttact |
791 |
Q |
| |
|
||||||||||| | |||||||||||| ||||| ||||||||||||| ||||| || || ||| ||||||||||| ||||| |
|
|
| T |
29812900 |
tttagaatactcctctctttctagattgacgactagaaagggatttactaactacacttcattcattttgtattttcttact |
29812819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 29767370 - 29767329
Alignment:
| Q |
26 |
taagagtgatcatcaatggcaatacatttttctatacatatg |
67 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||| ||| |
|
|
| T |
29767370 |
taagagtgatcatcaacggaaatacatttttctatacacatg |
29767329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 6e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 97 - 344
Target Start/End: Original strand, 12592388 - 12592638
Alignment:
| Q |
97 |
atgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgact |
196 |
Q |
| |
|
||||||||||| |||||||||||||| ||| ||| || ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || | | |
|
|
| T |
12592388 |
atgtatcatttgcatctttttcatatgcaaatggagaacttcaatgataatatggacaaagcacttttagaaaataagtggaaccatgcagaggtttatt |
12592487 |
T |
|
| Q |
197 |
ttgga---tccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacat |
293 |
Q |
| |
|
|||| || ||||||||||||||||||||||| |||||||||| |||| | |||| |||||||||||||||||||||||| || | |||||||||| |
|
|
| T |
12592488 |
ttggtgtctctgcattcatgtatagtggaatccatgtattgaaagataaaaacaacatggaggatattcgattcaccaacccagcgagtgatgctaacat |
12592587 |
T |
|
| Q |
294 |
tgtgttacgctcgggatgttgaagtaagcatatcattcattttacgcaaat |
344 |
Q |
| |
|
|||||||| ||||| ||||| ||||||| |||||||||||||||| ||||| |
|
|
| T |
12592588 |
tgtgttacactcggaatgttaaagtaagtatatcattcattttacccaaat |
12592638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 208883 - 208618
Alignment:
| Q |
14 |
ctcaatgtcctctaagagtgatcatcaatggcaatacatttttctatacatatgatgagaagatacgtatgtca---cgactgaaaatgtatcatttaaa |
110 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||| || |||| || | | | ||||||||||| | |
|
|
| T |
208883 |
ctcaacgtcctgtaagagtggtcatcaatggcaatacatttttctatacacatgattcgaagatagataggtcatcacggccggacatgtatcatttgca |
208784 |
T |
|
| Q |
111 |
tctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccattc |
210 |
Q |
| |
|
||||||||||||| ||| |||||| ||||| || | ||||||||||||||| | ||||||||||||||| |||||||||||||| |||||| | ||||| |
|
|
| T |
208783 |
tctttttcatatgcaaatggaaaacttcaatgaaaatatggacaaagcactctcagaaaataagtggaatcatgcagagcttgattttggactctcattc |
208684 |
T |
|
| Q |
211 |
atgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaaccca |
276 |
Q |
| |
|
|| | |||||||||||| |||||||||||| |||||||||||| ||||||||||||| ||||||| |
|
|
| T |
208683 |
ctggaaagtggaatccatgtattgaaagagagaagtagcatgaacgatattcgattcatcaaccca |
208618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 519
Target Start/End: Complemental strand, 235972 - 235903
Alignment:
| Q |
450 |
atgtaacttggtttcgtaatgcaggtaaaagagagcatcggtcagtcttttataaaatcaacccaaacaa |
519 |
Q |
| |
|
||||||||||| ||| |||||||||| |||||||||| ||||| |||||| |||| ||| |||||||| |
|
|
| T |
235972 |
atgtaacttggcttctcaatgcaggtagaagagagcattggtcactcttttggaaaaccaatccaaacaa |
235903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 280
Target Start/End: Complemental strand, 5918407 - 5918229
Alignment:
| Q |
102 |
tcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttgga |
201 |
Q |
| |
|
||||||| || ||||||||||| ||| ||||||||||| ||| | |||| |||||||||||||||| |||||||||||| | |||||||||| |
|
|
| T |
5918407 |
tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg |
5918308 |
T |
|
| Q |
202 |
tccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagaga |
280 |
Q |
| |
|
| |||| | |||||||||||| | ||||||||||||||||| |||| |||||| | ||||||||| ||||||| |
|
|
| T |
5918307 |
tttgaattccataaaagtggaatccatgtgttgaaagagaaaagtagtatgatggatatccaattcaccaatccagaga |
5918229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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