View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1435_low_10 (Length: 524)

Name: NF1435_low_10
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1435_low_10
NF1435_low_10
[»] chr6 (4 HSPs)
chr6 (16-508)||(33425555-33426043)
chr6 (338-389)||(686551-686602)
chr6 (357-389)||(13729001-13729033)
chr6 (338-378)||(16659722-16659762)
[»] chr8 (2 HSPs)
chr8 (327-386)||(8980757-8980817)
chr8 (357-386)||(34227394-34227423)
[»] chr7 (5 HSPs)
chr7 (338-386)||(12005523-12005571)
chr7 (338-386)||(47370220-47370268)
chr7 (338-386)||(442602-442650)
chr7 (338-382)||(31307922-31307966)
chr7 (338-382)||(35158254-35158298)
[»] chr5 (6 HSPs)
chr5 (353-389)||(21180357-21180393)
chr5 (338-382)||(6897044-6897088)
chr5 (338-382)||(12148168-12148212)
chr5 (357-389)||(17885766-17885798)
chr5 (338-382)||(28796418-28796462)
chr5 (357-389)||(31567697-31567729)
[»] chr4 (4 HSPs)
chr4 (357-386)||(17251524-17251553)
chr4 (357-386)||(25244459-25244488)
chr4 (357-386)||(30919194-30919223)
chr4 (345-386)||(39152024-39152065)
[»] chr3 (2 HSPs)
chr3 (338-382)||(5572213-5572257)
chr3 (357-389)||(26769985-26770017)
[»] chr2 (3 HSPs)
chr2 (338-382)||(9419759-9419803)
chr2 (338-386)||(23381227-23381275)
chr2 (357-389)||(41100971-41101003)
[»] chr1 (2 HSPs)
chr1 (338-382)||(23161897-23161941)
chr1 (338-382)||(44961077-44961121)


Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 508
Target Start/End: Complemental strand, 33426043 - 33425555
Alignment:
Q  16 atgactaaatagatcttaccaataactttatatcgtctatcactaacttttattcattatattttaatattttaacataaaattattgtgagacccacnn 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  33426043 atgactaaatagatcttaccaataactttatatcgtctatcactaacttttattcattatattttaatattttaacataaaattattgtgagacccacaa 33425944  T
Q  116 nnnnnncgagttcttattgtaacatctctactct-taagtatcattttgtatttctctccaatggagtacctatgaattgaggtaccatgtcttatgaag 214  Q
          |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||     |||||||||||||||||||    
T  33425943 aaagagcgagttcttattgtaacatctctactctataagtatcattttgtatttctctccaatgaggtacctatga-----ggtaccatgtcttatgaag 33425849  T
Q  215 tgaagattctttcattagagatggtttttgaaaatttgttgaagaatctaaaaagccggaagtcttatattgaaaattatattttattaacttttaaaat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33425848 tgaagattctttcattagagatggtttttgaaaatttgttgaagaatctaaaaagccggaagtcttatattgaaaattatattttattaacttttaaaat 33425749  T
Q  315 attttattacacaatttgatgtgatgaaagttcaaaataaataatcttcaaattacaaggacgaaatctaaacaannnnnnnnatatgataatctaaaaa 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| |||||||||||||    
T  33425748 attttattacacaatttgatgtgatgaaagttcaaaataaataatcttcaaattacaaggacgaaatctaaacaattttttttataggataatctaaaaa 33425649  T
Q  415 tgacttatatattagagaggtaaaacactattaattcatcaaataagttaatttatgtagttgatccccttattaagaaaatgcttgtttggtt 508  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||| ||  |||||||||||||||| ||||||    
T  33425648 tgacttatatattagagagataaaacactattaatccatcaaataagttgatttatgcagttgatctccccattaagaaaatgcttgcttggtt 33425555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 389
Target Start/End: Original strand, 686551 - 686602
Alignment:
Q  338 atgaaagttcaaaataaataatcttcaaattacaaggacgaaatctaaacaa 389  Q
    ||||| || |||||| || |||||||||||||||||||||||||| ||||||    
T  686551 atgaaggtccaaaatcaaaaatcttcaaattacaaggacgaaatccaaacaa 686602  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 389
Target Start/End: Complemental strand, 13729033 - 13729001
Alignment:
Q  357 aatcttcaaattacaaggacgaaatctaaacaa 389  Q
    |||||||||||||||||||||||| ||||||||    
T  13729033 aatcttcaaattacaaggacgaaaactaaacaa 13729001  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 378
Target Start/End: Original strand, 16659722 - 16659762
Alignment:
Q  338 atgaaagttcaaaataaataatcttcaaattacaaggacga 378  Q
    ||||| || ||||||||| ||||||||||||||||||||||    
T  16659722 atgaaggtccaaaataaaaaatcttcaaattacaaggacga 16659762  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 386
Target Start/End: Original strand, 8980757 - 8980817
Alignment:
Q  327 aatttgatgtgatgaaagttcaaaa-taaataatcttcaaattacaaggacgaaatctaaa 386  Q
    |||||||||| ||||| || ||||| |||| |||||||||||||||| |||||||||||||    
T  8980757 aatttgatgtcatgaaggtccaaaactaaagaatcttcaaattacaaagacgaaatctaaa 8980817  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 386
Target Start/End: Complemental strand, 34227423 - 34227394
Alignment:
Q  357 aatcttcaaattacaaggacgaaatctaaa 386  Q
    ||||||||||||||||||||||||||||||    
T  34227423 aatcttcaaattacaaggacgaaatctaaa 34227394  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 386
Target Start/End: Original strand, 12005523 - 12005571
Alignment:
Q  338 atgaaagttcaaaataaataatcttcaaattacaaggacgaaatctaaa 386  Q
    |||||||| ||||| ||| ||||||||| ||||||||||||||||||||    
T  12005523 atgaaagtccaaaacaaaaaatcttcaagttacaaggacgaaatctaaa 12005571  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 47370268 - 47370220
Alignment:
Q  338 atgaaagttcaaaataaataatcttcaaattacaaggacgaaatctaaa 386  Q
    ||||| || ||||||||| ||||||||| ||||||||||||||||||||    
T  47370268 atgaaggtccaaaataaaaaatcttcaagttacaaggacgaaatctaaa 47370220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 442650 - 442602
Alignment:
Q  338 atgaaagttcaaaataaataatcttcaaattacaaggacgaaatctaaa 386  Q
    ||||| || ||||| ||| ||||||||| ||||||||||||||||||||    
T  442650 atgaaggtccaaaacaaaaaatcttcaagttacaaggacgaaatctaaa 442602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 31307966 - 31307922
Alignment:
Q  338 atgaaagttcaaaataaataatcttcaaattacaaggacgaaatc 382  Q
    ||||| || ||||| ||| ||||||||||||||||||||||||||    
T  31307966 atgaaggtccaaaacaaaaaatcttcaaattacaaggacgaaatc 31307922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 35158298 - 35158254
Alignment:
Q  338 atgaaagttcaaaataaataatcttcaaattacaaggacgaaatc 382  Q
    ||||| || |||||| || ||||||||||||||||||||||||||    
T  35158298 atgaaggtccaaaatcaaaaatcttcaaattacaaggacgaaatc 35158254  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 21180357 - 21180393
Alignment:
Q  353 aaataatcttcaaattacaaggacgaaatctaaacaa 389  Q
    |||||||||||||||||||||||||||| ||||||||    
T  21180357 aaataatcttcaaattacaaggacgaaaactaaacaa 21180393  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 6897044 - 6897088
Alignment:
Q  338 atgaaagttcaaaataaataatcttcaaattacaaggacgaaatc 382  Q
    ||||| || ||||| ||| ||||||||||||||||||||||||||    
T  6897044 atgaaggtccaaaacaaaaaatcttcaaattacaaggacgaaatc 6897088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 12148168 - 12148212
Alignment:
Q  338 atgaaagttcaaaataaataatcttcaaattacaaggacgaaatc 382  Q
    ||||| || ||||| ||| ||||||||||||||||||||||||||    
T  12148168 atgaaggtccaaaacaaaaaatcttcaaattacaaggacgaaatc 12148212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 389
Target Start/End: Complemental strand, 17885798 - 17885766
Alignment:
Q  357 aatcttcaaattacaaggacgaaatctaaacaa 389  Q
    |||||||||||||||||||||||| ||||||||    
T  17885798 aatcttcaaattacaaggacgaaaactaaacaa 17885766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 28796462 - 28796418
Alignment:
Q  338 atgaaagttcaaaataaataatcttcaaattacaaggacgaaatc 382  Q
    ||||| ||||||||  || ||||||||||||||||||||||||||    
T  28796462 atgaaggttcaaaaccaaaaatcttcaaattacaaggacgaaatc 28796418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 389
Target Start/End: Complemental strand, 31567729 - 31567697
Alignment:
Q  357 aatcttcaaattacaaggacgaaatctaaacaa 389  Q
    ||||||||||||||||||| |||||||||||||    
T  31567729 aatcttcaaattacaaggatgaaatctaaacaa 31567697  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 386
Target Start/End: Original strand, 17251524 - 17251553
Alignment:
Q  357 aatcttcaaattacaaggacgaaatctaaa 386  Q
    ||||||||||||||||||||||||||||||    
T  17251524 aatcttcaaattacaaggacgaaatctaaa 17251553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 386
Target Start/End: Complemental strand, 25244488 - 25244459
Alignment:
Q  357 aatcttcaaattacaaggacgaaatctaaa 386  Q
    ||||||||||||||||||||||||||||||    
T  25244488 aatcttcaaattacaaggacgaaatctaaa 25244459  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 386
Target Start/End: Original strand, 30919194 - 30919223
Alignment:
Q  357 aatcttcaaattacaaggacgaaatctaaa 386  Q
    ||||||||||||||||||||||||||||||    
T  30919194 aatcttcaaattacaaggacgaaatctaaa 30919223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 39152065 - 39152024
Alignment:
Q  345 ttcaaaataaataatcttcaaattacaaggacgaaatctaaa 386  Q
    ||||||| ||| |||||||||||||||||||||||| |||||    
T  39152065 ttcaaaacaaaaaatcttcaaattacaaggacgaaaactaaa 39152024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 5572213 - 5572257
Alignment:
Q  338 atgaaagttcaaaataaataatcttcaaattacaaggacgaaatc 382  Q
    ||||| || |||||| || ||||||||||||||||||||||||||    
T  5572213 atgaaggtccaaaatcaaaaatcttcaaattacaaggacgaaatc 5572257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 389
Target Start/End: Complemental strand, 26770017 - 26769985
Alignment:
Q  357 aatcttcaaattacaaggacgaaatctaaacaa 389  Q
    |||||||||||||||||||||||| ||||||||    
T  26770017 aatcttcaaattacaaggacgaaaactaaacaa 26769985  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 9419759 - 9419803
Alignment:
Q  338 atgaaagttcaaaataaataatcttcaaattacaaggacgaaatc 382  Q
    |||||||| ||||| ||| ||||||||| ||||||||||||||||    
T  9419759 atgaaagtccaaaacaaaaaatcttcaagttacaaggacgaaatc 9419803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 23381275 - 23381227
Alignment:
Q  338 atgaaagttcaaaataaataatcttcaaattacaaggacgaaatctaaa 386  Q
    |||||||| ||||||||| || ||||||||||||| ||| |||||||||    
T  23381275 atgaaagtccaaaataaaaaagcttcaaattacaaagacaaaatctaaa 23381227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 389
Target Start/End: Original strand, 41100971 - 41101003
Alignment:
Q  357 aatcttcaaattacaaggacgaaatctaaacaa 389  Q
    |||||||||||||||||||||||| ||||||||    
T  41100971 aatcttcaaattacaaggacgaaaactaaacaa 41101003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 23161941 - 23161897
Alignment:
Q  338 atgaaagttcaaaataaataatcttcaaattacaaggacgaaatc 382  Q
    ||||| || |||||| || ||||||||||||||||||||||||||    
T  23161941 atgaaggtccaaaatcaaaaatcttcaaattacaaggacgaaatc 23161897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 44961121 - 44961077
Alignment:
Q  338 atgaaagttcaaaataaataatcttcaaattacaaggacgaaatc 382  Q
    ||||| || ||||||||| |||||||||||||||||||| |||||    
T  44961121 atgaaggtccaaaataaaaaatcttcaaattacaaggacaaaatc 44961077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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