View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_103 (Length: 252)
Name: NF1435_low_103
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_103 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 4035848 - 4035624
Alignment:
| Q |
12 |
agagacgagttccggcgaagagttgggccaaagctcacagtgacatccctaggagggtttgacacatgctacaatgtcccaatagttgtacccacaataa |
111 |
Q |
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| T |
4035848 |
agagacgagttccggcgaagagttgggccaaagctcacagtgacatccctaggagggtttgacacatgctacaatgtcccaatagttgtacccacaataa |
4035749 |
T |
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| Q |
112 |
cattcatattcaccggcatgaacgtgacattgccacaagacaacatccttatacatagcaccgcaggcagcaccacgtgtttggccatggcgggcgcacc |
211 |
Q |
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| T |
4035748 |
cattcatattcaccggcatgaacgtgacattgccacaagacaacatccttatacatagcaccgcaggcagcaccacgtgtttggccatggcgggcgcacc |
4035649 |
T |
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| Q |
212 |
cgataatgtgaactcggtgttgaac |
236 |
Q |
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||||||||||||||||||||||||| |
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| T |
4035648 |
cgataatgtgaactcggtgttgaac |
4035624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 13951855 - 13952079
Alignment:
| Q |
12 |
agagacgagttccggcgaagagttgggccaaagctcacagtgacatccctaggagggtttgacacatgctacaatgtcccaatagttgtacccacaataa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13951855 |
agagacgagttccggcgaagagttgggccaaagctcacagtgacatccctaggagggtttgacacatgctacaatgtcccaatagttgtacccacaataa |
13951954 |
T |
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| Q |
112 |
cattcatattcaccggcatgaacgtgacattgccacaagacaacatccttatacatagcaccgcaggcagcaccacgtgtttggccatggcgggcgcacc |
211 |
Q |
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| T |
13951955 |
cattcatattcaccggtatgaacgtgacattgccacaagacaacatccttatacatagcaccgcaggcagcaccacgtgtttggccatggcgggcgcacc |
13952054 |
T |
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| Q |
212 |
cgataatgtgaactcggtgttgaac |
236 |
Q |
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| T |
13952055 |
cgataatgtgaactcggtgttgaac |
13952079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 14705041 - 14705261
Alignment:
| Q |
16 |
acgagttccggcgaagagttgggccaaagctcacagtgacatccctaggagggtttgacacatgctacaatgtcccaatagttgtacccacaataacatt |
115 |
Q |
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||||||| || ||| ||||||| ||||| || | |||||| ||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |
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| T |
14705041 |
acgagtttcgccgacgagttggcccaaaactacctgtgacaaccctaggagggttcgacacatgctacaatgtcccaatagttgtaccaactataacatt |
14705140 |
T |
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| Q |
116 |
catattcaccggcatgaacgtgacattgccacaagacaacatccttatacatagcaccgcaggcagcaccacgtgtttggccatggcgggcgcacccgat |
215 |
Q |
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| T |
14705141 |
cttgttctcaggcatgaatgtaacactaccaccagacaacatcgtcatacacagcaccgccggtagcacaacatgtttggccatggcaggagcacccgat |
14705240 |
T |
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| Q |
216 |
aatgtgaactcggtgttgaac |
236 |
Q |
| |
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|| |||||||||||||||||| |
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| T |
14705241 |
aacgtgaactcggtgttgaac |
14705261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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