View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_104 (Length: 251)
Name: NF1435_low_104
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_104 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 22198511 - 22198271
Alignment:
| Q |
1 |
tatattattgaatacacagagacaaaaagaatacagagacaagttggtaaaacatatacaaccttaaaacactattttataaaatgctataggcggcaat |
100 |
Q |
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| T |
22198511 |
tatattattgaatacacagggacaaaaagaatacagagacaagttggtaaaacatatacaaccttaaaactctattttataaaatgctataagcggcaat |
22198412 |
T |
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| Q |
101 |
aacgatctcttcttcatcgtgagtttgatggagagatggattgaggtggtgagagggagaacgagtgaacggtgagatgaaaaaacgagatcaatagaga |
200 |
Q |
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| T |
22198411 |
aacgatctcttcttcatcgtgagtttgatggagagatggattgaggtggtgagagggagaacgagtgaacggtgaggtgaaaaaacgagatcaatagaga |
22198312 |
T |
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| Q |
201 |
aaaataggtgatgggtttaccatttatgagaaggctctgtg |
241 |
Q |
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| T |
22198311 |
aaaatatgtgatgggtttacgatttatgagaaggttctgtg |
22198271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 234
Target Start/End: Complemental strand, 6814373 - 6814237
Alignment:
| Q |
86 |
gctataggcggcaataacgatctcttcttcatcgtgagtttgatggagagatggattgaggtggtgagagggagaacgagtgaacggtgagatgaaaaaa |
185 |
Q |
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| T |
6814373 |
gctataagcggcagtaacgatctcttcttcattgtgagtttgatggagagatg------------gagagtgagaaagagggaaaggtgaggtgaaaaaa |
6814286 |
T |
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| Q |
186 |
cgagatcaatagagaaaaataggtgatgggtttaccatttatgagaagg |
234 |
Q |
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| T |
6814285 |
cgatttcaattgagaagaatatgtgatgggtatgcgatttatgagaagg |
6814237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 17316252 - 17316320
Alignment:
| Q |
6 |
tattgaatacacagagacaaaaagaatacagagacaagttggtaaaacatatacaaccttaaaacactat |
75 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||| | ||||||||| |||| |
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| T |
17316252 |
tattgaatacacagagacaaagagaa-acagagacaagttggtaaaacatatggagccttaaaactctat |
17316320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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