View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_108 (Length: 250)
Name: NF1435_low_108
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_108 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 31 - 250
Target Start/End: Original strand, 11212438 - 11212659
Alignment:
| Q |
31 |
tctacttatctttcttccaatttcattcaacatttttcccttc-----gacaacctcnnnnnnncaatgttcctattttttctcttccttctcttacctc |
125 |
Q |
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| T |
11212438 |
tctacttatctttcttccaatttcattcaacatttttcccttccctccgacaacctcaaaa---caatgttcctattttttctcttccttctattacctc |
11212534 |
T |
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| Q |
126 |
acttcactctttccaacacaatcattttatcacaaaacaaaacactcttaagccaaaaccaaaccttccaacttggtctcttcaacttagaacaacaaaa |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11212535 |
acttcactctttccaacacaatcattttatcacaaaacaaaacactcttaagccaaaaccaaaccttccaacttggtctcttcaacttagaacaacaaaa |
11212634 |
T |
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| Q |
226 |
ccaactacaacctcgttactatctt |
250 |
Q |
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| T |
11212635 |
ccaactacaacctcgttactatctt |
11212659 |
T |
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