View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_11 (Length: 514)
Name: NF1435_low_11
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 29113160 - 29112661
Alignment:
| Q |
1 |
atatgactcaatttgaaatgccaaatcattagttttagcattgccacattgaactggttatgcatggaataccaggaaaagaatctgtatcagcagagaa |
100 |
Q |
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| T |
29113160 |
atatgactaaatttgaaatgccaaatcattagttttagcattgccacattgaactggttatgcatggaataccaggaaaagaatctgtatcagcggagaa |
29113061 |
T |
|
| Q |
101 |
gtttgacaatggtatgacaaatgatttgattcttgaagtgcagtattttgtccttgatgcaatccttgagttattctgccaacgagaggaattcattgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
29113060 |
gtttgacaatggtatgacaaatgatttgattcttgaagtgcaatattttgtccttgatgcaatccttgagttattctgccaatgagaggaattcattgat |
29112961 |
T |
|
| Q |
201 |
gaaatataagttaggtacaaacacagcttagcaggagaagtttagcaaacatgtaaaaaattaggaaaataaataaatatgcaactcctatgtataaata |
300 |
Q |
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| T |
29112960 |
gaaatataagttaggtacaaacacagcttagcaggagaagtttagcaaacatgtcaaaaattaggaaaataaataaatatgcaactcctatgtataaata |
29112861 |
T |
|
| Q |
301 |
taatccacaacagaaagacatttacatattattgttgttcttatttgttatactaataaatgatctgatttcaatttttcctatcgtttacaacaatgtt |
400 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29112860 |
taatccacaacagaaagacatttacatattat---tgttcttatttgttatactaataaatgatctgatttcaatttttcctattgtttacaacaatgtt |
29112764 |
T |
|
| Q |
401 |
ataggtacgcatacctaccaccatttagcagtgatagatctttgtcggagaatttattggccacgtaatgtagcttctcctctccaaaccaaattttctc |
500 |
Q |
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| T |
29112763 |
ataggtacgcatatctaccaccatttagcagtgatagatctttgtcggagaatttattggccacgtaatgtagattctcctctccaaaccaaattttctc |
29112664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 3 - 315
Target Start/End: Original strand, 33312734 - 33313046
Alignment:
| Q |
3 |
atgactcaatttgaaatgccaaatcattagttttagcattgccacattgaactggttatgcatggaataccaggaaaagaatctgtatcagcagagaagt |
102 |
Q |
| |
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|||||| ||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33312734 |
atgactaaatttgaaatggcaaatcattagttttagctttgccacattgaactgattatgcatggaataccaggaaaagaatctgtatcagcagagaagt |
33312833 |
T |
|
| Q |
103 |
ttgacaatggtatgacaaatgatttgattcttgaagtgcagtattttgtccttgatgcaatccttgagttattctgccaacgagaggaattcattgttga |
202 |
Q |
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| T |
33312834 |
ttgacaatggtatgaaaaatgatttgattcttgaagtgcaatattttgtccttgatgcaatccttgagttattctgcgaatgagaggaattcattgatga |
33312933 |
T |
|
| Q |
203 |
aatataagttaggtacaaacacagcttagcaggagaagtttagcaaacatgtaaaaaattaggaaaataaataaatatgcaactcctatgtataaatata |
302 |
Q |
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| |||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| || |
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| T |
33312934 |
attataagttaggtacaaacacaggttagcaggaaaagtttagcaagcatgtaaaaaattaggaaaaaaaataaatatgtaactcctatgtataaatgta |
33313033 |
T |
|
| Q |
303 |
atccacaacagaa |
315 |
Q |
| |
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|||| |||||||| |
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| T |
33313034 |
atccccaacagaa |
33313046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 400 - 500
Target Start/End: Original strand, 33313052 - 33313152
Alignment:
| Q |
400 |
tataggtacgcatacctaccaccatttagcagtgatagatctttgtcggagaatttattggccacgtaatgtagcttctcctctccaaaccaaattttct |
499 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| ||||||||||||||||||||||||| |
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| T |
33313052 |
tataggtacgcatatctaccaccatttagcagtgatagatctttgtcgtggaatttattaaccacataatgtagattctcctctccaaaccaaattttct |
33313151 |
T |
|
| Q |
500 |
c |
500 |
Q |
| |
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| |
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| T |
33313152 |
c |
33313152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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