View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1435_low_110 (Length: 250)
Name: NF1435_low_110
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_110 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 52113384 - 52113622
Alignment:
| Q |
12 |
aaatatattaagaatagggaaagctaatgcatggtcaagagtcacatattacacacaacaaaagagttgattgattactgaaaaataacagagttataca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52113384 |
aaatatattaagaatagggaaagctaatgcatggtcaagagtcacatattacacacaacaaaagagttgattgattactgaaaaataacagagttataca |
52113483 |
T |
|
| Q |
112 |
gacagatatataagataagatgatgagagaaatattaaaataccccactgggcctgaaaataattcatcaacctcgcttaacaggatcgaaattggaaac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52113484 |
gacagatatataagataagatgatgagagaaatattaaaataccccactgggcctgaaaataattcatcaacctcgcttaacaggatcgaaattggaaac |
52113583 |
T |
|
| Q |
212 |
accgataacagcaccaagaatagcagtaaccacaacacc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52113584 |
accgataacagcaccaagaatagcagtaaccacaacacc |
52113622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University