View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_111 (Length: 247)
Name: NF1435_low_111
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_111 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 247
Target Start/End: Complemental strand, 608606 - 608367
Alignment:
| Q |
5 |
tgtcgaataatataacaatgagcacaaataagaggaagtctctcatattttactccgatgtaaaaagcaaaacattatatttcctaccatgattttatta |
104 |
Q |
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| T |
608606 |
tgtccaataatatgacaatgagcacaaataagaggaagtctctcatgttctactccgatgtaaaaagcaaaacattatatttcctaccatgattttatta |
608507 |
T |
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| Q |
105 |
tgtgatattattgttaacaagaacccttacaaaaatgatcgaaaacacgatttctcgtgactatatatctaaagtaattggagtctcaatactgcaagaa |
204 |
Q |
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| T |
608506 |
tttgatattattgttaacaagaacccttac-aaaatgatcgaaaacacaatccctcgtgac--tatatctaaagtaattggagtctcaatactacaagaa |
608410 |
T |
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| Q |
205 |
tttttaaatagaagtctatgttcccaatattccaacgacaaat |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
608409 |
attttaaatagaagtctatgttcccaatattccaacgacaaat |
608367 |
T |
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