View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1435_low_13 (Length: 503)

Name: NF1435_low_13
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1435_low_13
NF1435_low_13
[»] chr7 (10 HSPs)
chr7 (257-492)||(5376279-5376514)
chr7 (83-218)||(5368284-5368419)
chr7 (239-394)||(5368062-5368214)
chr7 (21-127)||(5376119-5376228)
chr7 (279-408)||(36853046-36853175)
chr7 (262-361)||(35169949-35170048)
chr7 (21-84)||(5368451-5368515)
chr7 (297-411)||(24547662-24547777)
chr7 (286-335)||(46214467-46214516)
chr7 (434-486)||(5367415-5367467)
[»] chr8 (14 HSPs)
chr8 (262-358)||(26819258-26819354)
chr8 (284-341)||(3017471-3017528)
chr8 (270-335)||(26762851-26762916)
chr8 (291-340)||(39560339-39560388)
chr8 (285-337)||(10744257-10744309)
chr8 (262-340)||(30011758-30011836)
chr8 (269-340)||(16527482-16527553)
chr8 (312-407)||(34338653-34338748)
chr8 (295-340)||(2309154-2309200)
chr8 (283-337)||(43059451-43059505)
chr8 (291-340)||(29705899-29705948)
chr8 (343-399)||(4670602-4670657)
chr8 (285-354)||(16168305-16168376)
chr8 (276-340)||(31188874-31188938)
[»] chr6 (6 HSPs)
chr6 (276-356)||(733580-733662)
chr6 (284-341)||(18361298-18361355)
chr6 (290-335)||(31650307-31650352)
chr6 (283-362)||(8782972-8783051)
chr6 (276-339)||(25094709-25094772)
chr6 (270-339)||(7952307-7952376)
[»] chr5 (8 HSPs)
chr5 (290-369)||(36261960-36262039)
chr5 (288-407)||(35035571-35035691)
chr5 (286-337)||(18871012-18871063)
chr5 (290-340)||(36639769-36639819)
chr5 (290-356)||(16230759-16230827)
chr5 (269-333)||(16215390-16215454)
chr5 (289-340)||(16962198-16962248)
chr5 (263-353)||(7705307-7705397)
[»] chr2 (5 HSPs)
chr2 (270-405)||(10231799-10231935)
chr2 (285-382)||(9529506-9529600)
chr2 (285-339)||(5129658-5129712)
chr2 (283-320)||(35991377-35991414)
chr2 (287-339)||(44250661-44250713)
[»] chr1 (6 HSPs)
chr1 (262-354)||(14303921-14304015)
chr1 (323-405)||(16979581-16979664)
chr1 (262-340)||(24126880-24126957)
chr1 (299-333)||(32408099-32408133)
chr1 (270-323)||(15867621-15867674)
chr1 (286-411)||(34796781-34796907)
[»] chr4 (3 HSPs)
chr4 (270-339)||(1132154-1132223)
chr4 (270-340)||(10997329-10997399)
chr4 (277-330)||(18966004-18966057)
[»] chr3 (5 HSPs)
chr3 (283-341)||(48183708-48183765)
chr3 (294-356)||(48553069-48553131)
chr3 (291-340)||(38900006-38900055)
chr3 (290-335)||(43220827-43220872)
chr3 (285-354)||(44009252-44009323)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 257 - 492
Target Start/End: Original strand, 5376279 - 5376514
Alignment:
Q  257 gtgtattacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatggttggttgtgatttg 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  5376279 gtgtattacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcgcacatggttggttgtgatttt 5376378  T
Q  357 ctgacgttgtaaagcctttttacactgacaatatatcaaaattaaactcattatttaaaacacgtcttttaatcattcatttagtttactcttagtcgac 456  Q
    || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5376379 ctaatgttgtaaagcctttttacactgacaatatatcaaaattaaactcattatttaaaacacgtcttttaatcattcatttagtttattcttagtcgac 5376478  T
Q  457 atgagactgctcactcacttgtatttcaaaacctat 492  Q
    ||||||||| ||||||||||||||||||||||||||    
T  5376479 atgagactgttcactcacttgtatttcaaaacctat 5376514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 83 - 218
Target Start/End: Complemental strand, 5368419 - 5368284
Alignment:
Q  83 gataaaacgactattgtcagtcttggtggtggcaatatatgcatggatgtttcataccttagttctcaactcatttctagttacagtaaagaacttcagg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  5368419 gataaaacgactattgtcagtcttggtggtggcaatatatgcatggatgtttcataccttagttctcaagtgatttctagttacagtaaagaacttcagg 5368320  T
Q  183 tttgtctctattcatgattaggtgtctttaatattt 218  Q
    |||||||||||| ||||||||||  |||||||||||    
T  5368319 tttgtctctattgatgattaggttcctttaatattt 5368284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 239 - 394
Target Start/End: Complemental strand, 5368214 - 5368062
Alignment:
Q  239 aattcagataaattgtcggtgtattacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacac 338  Q
    |||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||   || ||||||||||||||      
T  5368214 aattcatataaattgtcagtgtattacacgttcaatgaatcatgatcatcagatcattaaaaacgtttggctgtaatc---acaacttctaaagtcacga 5368118  T
Q  339 atggttggttgtgatttgctgacgttgtaaagcctttttacactgacaatatatca 394  Q
    ||| ||||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  5368117 atgattggttgtgattttctgatgctgtaaagcctttttacactgacaatatatca 5368062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 5376119 - 5376228
Alignment:
Q  21 aatcccatgtcttctagtttacaaggaacctcaaaaaagaagg-agcccaat---ttcctcctctggataaaacgactattgtcagtcttggtggtggca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||   |     ||| |||||||||||||||||||||||||||||||||||    
T  5376119 aatcccatgtcttctagtttacaaggaacctcaaaaaagaagggagcccaatagatgaagactc-ggataaaacgactattgtcagtcttggtggtggca 5376217  T
Q  117 atatatgcatg 127  Q
    |||||||||||    
T  5376218 atatatgcatg 5376228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 279 - 408
Target Start/End: Complemental strand, 36853175 - 36853046
Alignment:
Q  279 catgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacac--atggttggttgtgatttgctgacgttgtaaagcctttt 376  Q
    |||||| ||||||||| ||||||  ||||| | |||||||||||||||||||||||||||  ||| ||||||||||||| |||||  ||||||  |||||    
T  36853175 catgatagtcagatcaataaaaatatttgattataatcataactacttctaaagtcacacatatgattggttgtgatttactgacaatgtaaa--ctttt 36853078  T
Q  377 tacactgacaatatatcaaaattaaactcatt 408  Q
    || || |||| | |||||||||||||||||||    
T  36853077 tataccgacagtgtatcaaaattaaactcatt 36853046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 262 - 361
Target Start/End: Original strand, 35169949 - 35170048
Alignment:
Q  262 ttacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatggttggttgtgatttgctgac 361  Q
    ||||||| ||||| |||  | ||||| |||| |||||| | |||||||| |||||||||||||||||||||||||||||| |||||| ||||||| ||||    
T  35169949 ttacactgtcaatcaattgtaatcgttagattattaaagatgtttgactttaatcataactacttctaaagtcacacatgattggttatgatttgttgac 35170048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 5368515 - 5368451
Alignment:
Q  21 aatcccatgtcttctagtttacaaggaacctcaaaaaagaa-ggagcccaatttcctcctctgga 84  Q
    ||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||||||    
T  5368515 aatcccatgtcctctaatttacaaggaacctcaaaaaagaagggagctcaatttcctcctctgga 5368451  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 411
Target Start/End: Complemental strand, 24547777 - 24547662
Alignment:
Q  297 aaaaacgtttgactgtaatcataactacttctaaagtcac--acatggttggttgtgatttgctgacgttgtaaagcctttttacactgacaatatatca 394  Q
    ||||| ||||||||  ||||||||||||||||||| ||||  | ||| |||||||||||||  ||||  ||||||  ||||||||||||||  | |||||    
T  24547777 aaaaatgtttgacttcaatcataactacttctaaaatcacagatatgattggttgtgatttattgacagtgtaaa-actttttacactgacggtgtatca 24547679  T
Q  395 aaattaaactcattatt 411  Q
    || | |||||| |||||    
T  24547678 aattcaaactctttatt 24547662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 46214467 - 46214516
Alignment:
Q  286 gtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtca 335  Q
    |||||||||| |||||||||||||| ||||||| |  |||||||||||||    
T  46214467 gtcagatcataaaaaacgtttgactttaatcattatgacttctaaagtca 46214516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 486
Target Start/End: Complemental strand, 5367467 - 5367415
Alignment:
Q  434 catttagtttactcttagtcgacatgagactgctcactcacttgtatttcaaa 486  Q
    ||||||||||| |||||||||||||  |||| |  ||||||||||||||||||    
T  5367467 catttagtttattcttagtcgacattggactacctactcacttgtatttcaaa 5367415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 262 - 358
Target Start/End: Original strand, 26819258 - 26819354
Alignment:
Q  262 ttacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatggttggttgtgatttgct 358  Q
    |||||| |||||| ||| |  ||||| ||||||||||||| |||||||| | |||  ||||||||||||||||||||||| ||||||||||||||||    
T  26819258 ttacacattcaatcaattacaatcgttagatcattaaaaatgtttgacttttatcgcaactacttctaaagtcacacatgattggttgtgatttgct 26819354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 3017528 - 3017471
Alignment:
Q  284 tcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatg 341  Q
    |||||||||||||||||| |||||||| |||||||||||||||  |||||||||||||    
T  3017528 tcgtcagatcattaaaaaagtttgactttaatcataactactttgaaagtcacacatg 3017471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 335
Target Start/End: Original strand, 26762851 - 26762916
Alignment:
Q  270 tcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtca 335  Q
    ||||| |||||| ||| |||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  26762851 tcaatcaatcataatcctcagatcagtaaaaacgtttgactttaatcataattacttctaaagtca 26762916  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 39560388 - 39560339
Alignment:
Q  291 atcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 340  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| ||||    
T  39560388 atcattaaaaatgtttgactttaatcataactacttctaaagtcatacat 39560339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 337
Target Start/End: Original strand, 10744257 - 10744309
Alignment:
Q  285 cgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcaca 337  Q
    ||||| |||||||||||||||||||| |||| |||||| ||||||||||||||    
T  10744257 cgtcacatcattaaaaacgtttgactttaattataactgcttctaaagtcaca 10744309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 340
Target Start/End: Complemental strand, 30011836 - 30011758
Alignment:
Q  262 ttacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 340  Q
    ||||||| ||||| ||||||  | |||| | ||||||||| ||||||||  ||||||||||||||||||| ||||||||    
T  30011836 ttacactgtcaatcaatcatacttgtcataacattaaaaatgtttgacttcaatcataactacttctaaaatcacacat 30011758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 340
Target Start/End: Complemental strand, 16527553 - 16527482
Alignment:
Q  269 ttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 340  Q
    |||||| |||| | ||| |||||||||||| ||||||||| | || || |||||||||||||||||| ||||    
T  16527553 ttcaatcaatcgtaatcatcagatcattaagaacgtttgagtttagtcgtaactacttctaaagtcatacat 16527482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 34338748 - 34338653
Alignment:
Q  312 taatcataactacttctaaagtcacacatggttggttgtgatttgctgacgttgtaaagcctttttacactgacaatatatcaaaattaaactcat 407  Q
    ||||||||||||||| |||||||||||||| || ||||| |||   ||||| |||||    ||||||||| |||| | |||||||||| |||||||    
T  34338748 taatcataactacttttaaagtcacacatgatttgttgtcattccttgacgatgtaacatttttttacacggacagtgtatcaaaattgaactcat 34338653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 2309154 - 2309200
Alignment:
Q  295 ttaaaaacgtttgactgtaatc-ataactacttctaaagtcacacat 340  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||||    
T  2309154 ttaaaaacatttggctgtaatcgataactacttctaaagtcacacat 2309200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 337
Target Start/End: Original strand, 43059451 - 43059505
Alignment:
Q  283 atcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcaca 337  Q
    ||||||| ||||| |||||  ||||||| |||| |||||||||||||||||||||    
T  43059451 atcgtcaaatcatcaaaaaactttgactttaataataactacttctaaagtcaca 43059505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 29705899 - 29705948
Alignment:
Q  291 atcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 340  Q
    ||||||| |||||||||||| | |||||||| ||||||||||||| ||||    
T  29705899 atcattataaacgtttgacttttatcataaccacttctaaagtcatacat 29705948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 399
Target Start/End: Complemental strand, 4670657 - 4670602
Alignment:
Q  343 ttggttgtgatttgctgacgttgtaaagcctttttacactgacaatatatcaaaatt 399  Q
    |||||||||||||| ||||  |||||| | ||||||||||||| |||||||||||||    
T  4670657 ttggttgtgatttgttgaccatgtaaaac-tttttacactgacgatatatcaaaatt 4670602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 354
Target Start/End: Original strand, 16168305 - 16168376
Alignment:
Q  285 cgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagt--cacacatggttggttgtgatt 354  Q
    ||||| |||||||||||| ||||||| ||||||| |||| |  ||||||  |||||||| ||||||||||||    
T  16168305 cgtcaaatcattaaaaacatttgactttaatcatcactaatattaaagtgacacacatgattggttgtgatt 16168376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 340
Target Start/End: Original strand, 31188874 - 31188938
Alignment:
Q  276 aatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 340  Q
    |||||| || |||||||||||| ||| |||| |||  |||||||| |||||| ||||||||||||    
T  31188874 aatcataattgtcagatcattacaaatgtttaacttcaatcataattacttcgaaagtcacacat 31188938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 276 - 356
Target Start/End: Original strand, 733580 - 733662
Alignment:
Q  276 aatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacac--atggttggttgtgatttg 356  Q
    |||||| | ||| ||||||||||||||||  |||| ||||| |||||||||||||||||||||  ||||||||||||||||||    
T  733580 aatcataaccgttagatcattaaaaacgtccgactttaatcgtaactacttctaaagtcacacgtatggttggttgtgatttg 733662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 18361355 - 18361298
Alignment:
Q  284 tcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatg 341  Q
    ||||||||||||||||||||||| ||| |||||||||||||||  |||||||||||||    
T  18361355 tcgtcagatcattaaaaacgtttaactttaatcataactactttgaaagtcacacatg 18361298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 31650307 - 31650352
Alignment:
Q  290 gatcattaaaaacgtttgactgtaatcataactacttctaaagtca 335  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||    
T  31650307 gatcattaaaaatgtttgactttaatcataactacttctaaagtca 31650352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 8782972 - 8783051
Alignment:
Q  283 atcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtc--acacatggttggttgtgatttgctgacg 362  Q
    |||||| ||||||||||||  ||||||| |||||||||||||||| ||||||  | | ||| |||||||||||||| |||||    
T  8782972 atcgtccgatcattaaaaa--tttgactttaatcataactacttcaaaagtcatatatatgattggttgtgatttgttgacg 8783051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 25094772 - 25094709
Alignment:
Q  276 aatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacaca 339  Q
    |||||| ||||||  ||||||||| | |||||||| ||||||||| ||||| ||||||||||||    
T  25094772 aatcataatcgtctaatcattaaacatgtttgactttaatcataagtacttttaaagtcacaca 25094709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 7952307 - 7952376
Alignment:
Q  270 tcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacaca 339  Q
    ||||| |||||| | |||| ||||||||||||| ||| ||| | |||||||| |||||||||| ||||||    
T  7952307 tcaatcaatcataaccgtcggatcattaaaaacatttcacttttatcataacaacttctaaagccacaca 7952376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 290 - 369
Target Start/End: Complemental strand, 36262039 - 36261960
Alignment:
Q  290 gatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatggttggttgtgatttgctgacgttgtaaa 369  Q
    ||||||||||||| |||| || |||||||||||||||||||||||||| ||  ||| || ||||||||||||| ||||||    
T  36262039 gatcattaaaaacatttggctttaatcataactacttctaaagtcacatataattgtttctgatttgctgacggtgtaaa 36261960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 288 - 407
Target Start/End: Original strand, 35035571 - 35035691
Alignment:
Q  288 cagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacac--atggttggttgtgatttgctgacgttgtaaagcctttttacactgac 385  Q
    ||||||| ||||||  ||||| | |||||||||||||||||||| ||||||  ||| ||||||||||||| |||||  ||||||   |||||| || |||    
T  35035571 cagatcaataaaaatatttgattttaatcataactacttctaaaatcacacatatgattggttgtgatttactgacaatgtaaa-attttttataccgac 35035669  T
Q  386 aatatatcaaaattaaactcat 407  Q
    | | ||||||||||||||||||    
T  35035670 agtgtatcaaaattaaactcat 35035691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 337
Target Start/End: Original strand, 18871012 - 18871063
Alignment:
Q  286 gtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcaca 337  Q
    |||||||||||||| |||||||||  |||| |||||||||||||||||||||    
T  18871012 gtcagatcattaaacacgtttgaccttaatgataactacttctaaagtcaca 18871063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 36639819 - 36639769
Alignment:
Q  290 gatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 340  Q
    ||||||||| ||||||| | | |||||||||||||||||||||||||||||    
T  36639819 gatcattaagaacgtttcaatttaatcataactacttctaaagtcacacat 36639769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 16230827 - 16230759
Alignment:
Q  290 gatcattaaaaacgtttgactgtaatcataactacttctaaagtc--acacatggttggttgtgatttg 356  Q
    ||||||| |||| |||||||| |||||||||||||||||||| ||  ||| ||| ||||||||||||||    
T  16230827 gatcatttaaaatgtttgactttaatcataactacttctaaaatcaaacatatgattggttgtgatttg 16230759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 16215390 - 16215454
Alignment:
Q  269 ttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagt 333  Q
    ||||||||||||| || | ||||| |||||||| ||||||||  |||| ||||||||||||||||    
T  16215390 ttcaatgaatcataattgacagattattaaaaatgtttgacttgaatcgtaactacttctaaagt 16215454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 340
Target Start/End: Original strand, 16962198 - 16962248
Alignment:
Q  289 agatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 340  Q
    |||||||||||| ||||||||| |||||||||||| |||||||||| |||||    
T  16962198 agatcattaaaa-cgtttgactttaatcataactatttctaaagtcgcacat 16962248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 353
Target Start/End: Original strand, 7705307 - 7705397
Alignment:
Q  263 tacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatggttggttgtgat 353  Q
    |||||| ||||| |||||| |  ||||| |||||  |||| ||||||| | |||||||| |||| |||||||||||||| || ||||||||    
T  7705307 tacactgtcaatcaatcataacagtcaggtcattggaaacatttgacttttatcataaccacttttaaagtcacacatgatttgttgtgat 7705397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 405
Target Start/End: Complemental strand, 10231935 - 10231799
Alignment:
Q  270 tcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat--ggttggttgtgatttgctgacgttgta 367  Q
    ||||| |||||  ||| |||||||||||||| | ||||||| | |||||||||| ||||||| ||||||||  | ||| |||| || ||  |||  ||||    
T  10231935 tcaatcaatcacaatcatcagatcattaaaatcatttgacttttatcataactatttctaaaatcacacatatgattgattgtaatatgtggacagtgta 10231836  T
Q  368 aagcctttttacactgacaatatatcaaaattaaactc 405  Q
    || | |||||||||||||||||||||||||||||||||    
T  10231835 aaac-tttttacactgacaatatatcaaaattaaactc 10231799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 382
Target Start/End: Complemental strand, 9529600 - 9529506
Alignment:
Q  285 cgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacac--atggttggttgtgatttgctgacgttgtaaagcctttttacact 382  Q
    ||||| ||||||||||||||||||||    | |||| ||||| |||||||||||  ||| |||||||||||||||||| | ||||||  |||||||||||    
T  9529600 cgtcacatcattaaaaacgtttgact----ttataattacttttaaagtcacacatatgattggttgtgatttgctgatgatgtaaa-actttttacact 9529506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 5129658 - 5129712
Alignment:
Q  285 cgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacaca 339  Q
    ||||| ||||| |||||| ||||||  ||||||||| ||||||||||||||||||    
T  5129658 cgtcatatcataaaaaacatttgaccttaatcataaatacttctaaagtcacaca 5129712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 320
Target Start/End: Complemental strand, 35991414 - 35991377
Alignment:
Q  283 atcgtcagatcattaaaaacgtttgactgtaatcataa 320  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  35991414 atcgtcagatcattaaaaacgtttgactctaataataa 35991377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 44250713 - 44250661
Alignment:
Q  287 tcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacaca 339  Q
    |||| |||||||||| |||||  | |||||||||||| |||||||||||||||    
T  44250713 tcagctcattaaaaatgtttgcttttaatcataactatttctaaagtcacaca 44250661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 354
Target Start/End: Original strand, 14303921 - 14304015
Alignment:
Q  262 ttacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtca--cacatggttggttgtgatt 354  Q
    ||||||| ||||| |||||  ||||||||||| ||| ||| |||||||| ||||||||||||||| ||||||||  || ||| ||||||||||||    
T  14303921 ttacactgtcaatcaatcagcatcgtcagatcgttataaaagtttgactttaatcataactacttttaaagtcactcatatgattggttgtgatt 14304015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 405
Target Start/End: Complemental strand, 16979664 - 16979581
Alignment:
Q  323 acttctaaagtcacacatg--gttggttgtgatttgctgacgttgtaaagcctttttacactgacaatatatcaaaattaaactc 405  Q
    ||||||||||||||| ||   ||||||||||||||| ||||  |||||| | |||||||||||||| | ||||||||||||||||    
T  16979664 acttctaaagtcacatatattgttggttgtgatttgttgacagtgtaaatc-tttttacactgacagtgtatcaaaattaaactc 16979581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 340
Target Start/End: Original strand, 24126880 - 24126957
Alignment:
Q  262 ttacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 340  Q
    ||||||| ||||| |||| | ||| |||||||||||||||  ||||||| ||| |||||||||||||||| ||| ||||    
T  24126880 ttacactatcaatcaatcttaatcatcagatcattaaaaaa-tttgactttaaacataactacttctaaaatcaaacat 24126957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 32408099 - 32408133
Alignment:
Q  299 aaacgtttgactgtaatcataactacttctaaagt 333  Q
    |||||||||||| ||||||||||||||||||||||    
T  32408099 aaacgtttgactttaatcataactacttctaaagt 32408133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 15867674 - 15867621
Alignment:
Q  270 tcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataacta 323  Q
    ||||| |||||| ||||||| ||||||||||  |||||||| ||||||||||||    
T  15867674 tcaatcaatcataatcgtcatatcattaaaactgtttgactttaatcataacta 15867621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 411
Target Start/End: Complemental strand, 34796907 - 34796781
Alignment:
Q  286 gtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat--ggttggttgtgatttgctgacgttgtaaagcctttttacactg 383  Q
    |||| ||||||||| | |||||| | | |||||||||| |||||| || || |||  |||||||||| || ||||||| |||||||  |||||| || ||    
T  34796907 gtcatatcattaaacatgtttgaattttatcataactaattctaacgtaactcatatggttggttgtcatatgctgacattgtaaa-actttttgcagtg 34796809  T
Q  384 acaatatatcaaaattaaactcattatt 411  Q
    ||| | ||| |||||||| |||||||||    
T  34796808 acagtgtatgaaaattaagctcattatt 34796781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 1132154 - 1132223
Alignment:
Q  270 tcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacaca 339  Q
    ||||| |||||| | ||||||||||||| |||| ||||||| | |||||||||| |||||||| ||||||    
T  1132154 tcaatcaatcataaccgtcagatcattagaaacatttgacttttatcataactaattctaaagacacaca 1132223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 10997399 - 10997329
Alignment:
Q  270 tcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 340  Q
    ||||| |||||| ||||| | ||||||||||||||  |||| |||||||| ||| ||||||||| ||||||    
T  10997399 tcaatcaatcataatcgttatatcattaaaaacgtaagactttaatcatatctatttctaaagttacacat 10997329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 330
Target Start/End: Complemental strand, 18966057 - 18966004
Alignment:
Q  277 atcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaa 330  Q
    ||||| ||||||| ||||||||||| |||||||| ||||| |||||| ||||||    
T  18966057 atcataatcgtcatatcattaaaaatgtttgactttaatcgtaactaattctaa 18966004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 48183708 - 48183765
Alignment:
Q  283 atcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatg 341  Q
    ||||||||||||| ||||||||||||  || | ||| ||||||||||||||||||||||    
T  48183708 atcgtcagatcat-aaaaacgtttgaaagtcaacatgactacttctaaagtcacacatg 48183765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 48553131 - 48553069
Alignment:
Q  294 attaaaaacgtttgactgtaatcataactacttctaaagtcacacatggttggttgtgatttg 356  Q
    ||||||||| ||||| | |||||||||  ||||||||||||||| ||| ||| ||||||||||    
T  48553131 attaaaaacatttgaatttaatcataaaaacttctaaagtcacatatgattgattgtgatttg 48553069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 38900006 - 38900055
Alignment:
Q  291 atcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 340  Q
    ||||||||||||||||||||   ||| ||||||||| |||||||||||||    
T  38900006 atcattaaaaacgtttgacttgtatcctaactacttttaaagtcacacat 38900055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 43220872 - 43220827
Alignment:
Q  290 gatcattaaaaacgtttgactgtaatcataactacttctaaagtca 335  Q
    ||||| ||||||||||||||| |||||||||  |||||||||||||    
T  43220872 gatcaataaaaacgtttgactttaatcataatcacttctaaagtca 43220827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 354
Target Start/End: Complemental strand, 44009323 - 44009252
Alignment:
Q  285 cgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagt--cacacatggttggttgtgatt 354  Q
    ||||| |||||||||||| ||||||| ||||||| |||| |  ||||||  |||||||| ||||||||||||    
T  44009323 cgtcaaatcattaaaaacatttgactttaatcatcactaatattaaagtgacacacatgattggttgtgatt 44009252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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