View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_138 (Length: 233)
Name: NF1435_low_138
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_138 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 47424518 - 47424719
Alignment:
| Q |
19 |
ttctctagaagaaaaaaggattattcttagcataaccttgaaatcaattttcagcgaccttacgaaaaatcatctacaacactgcagaaaccatctaatc |
118 |
Q |
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| T |
47424518 |
ttctctagaagaaaaaaggattattcttagcataaccttgaaatcaattttcaacgaccttacgaaaaatcatctacaacactgcagaaaccatctaatc |
47424617 |
T |
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| Q |
119 |
tacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaattgatgtttgggtacttcatc |
218 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
47424618 |
tacgtacctgttggtgcacttctgttaatgttgatataagcatctgcttccccacaatgcctttcataagccgtacaaattgatgtttggacacttcatc |
47424717 |
T |
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| Q |
219 |
tc |
220 |
Q |
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|| |
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| T |
47424718 |
tc |
47424719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 47391042 - 47391152
Alignment:
| Q |
110 |
catctaatctacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaattgatgtttggg |
209 |
Q |
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|||||| ||| | ||||||||||||||||| ||||||||| |||||||||| | ||||||||| |||||||||||| ||||||| || | ||| || |
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| T |
47391042 |
catctattctgcctacctgttgttgcacttttgttaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttagg |
47391141 |
T |
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| Q |
210 |
tacttcatctc |
220 |
Q |
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|| |||||||| |
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| T |
47391142 |
tatttcatctc |
47391152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 47419405 - 47419515
Alignment:
| Q |
110 |
catctaatctacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaattgatgtttggg |
209 |
Q |
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|||||| ||||| ||||||||||||||||| || |||||| |||||||||| | ||||||||| |||||||||||| ||||||| || | |||||| |
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| T |
47419405 |
catctattctacctacctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttggg |
47419504 |
T |
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| Q |
210 |
tacttcatctc |
220 |
Q |
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| |||||||| |
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| T |
47419505 |
catttcatctc |
47419515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 220
Target Start/End: Original strand, 47421873 - 47421987
Alignment:
| Q |
106 |
aaaccatctaatctacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaattgatgtt |
205 |
Q |
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|||| ||||| ||||| ||||||||||||||||| || |||||| |||||||| | | ||||||||| |||||||||||| ||||||| || | || |
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| T |
47421873 |
aaactatctattctacctacctgttgttgcacttttgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaaatgttctt |
47421972 |
T |
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| Q |
206 |
tgggtacttcatctc |
220 |
Q |
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| |||| |||||||| |
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| T |
47421973 |
tcggtatttcatctc |
47421987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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