View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_14 (Length: 502)
Name: NF1435_low_14
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 197 - 492
Target Start/End: Original strand, 44858684 - 44858979
Alignment:
| Q |
197 |
agacgtgatgatccgcaatcccgcgatgtgttcaagcaagtgtgtaaatggaacatcgtttcaaaggatttggtaccgattatagagcattaccaccaag |
296 |
Q |
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| T |
44858684 |
agacgtgatgatccgcaatcccgcgatgtgttcaagctagtgtgtaaatggaacatcgtttcaaaggatttggtaccgattatagagcattaccaccaag |
44858783 |
T |
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| Q |
297 |
atcgtagcatgcttctcaatgcaggtttaagtttataaaaattgagtaaattttctgtttgagatttgattcattggattagttggtgttgagttttatt |
396 |
Q |
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| T |
44858784 |
atcgtagcatgcttctcaatgcaggtttaagtttataaaaattgagtaaattttctgtttgagatttgattcattggattggttggtgttgagttttatt |
44858883 |
T |
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| Q |
397 |
tttgttgttgaaattttcagttaaggttttggtgtttcttacaatgccgattgaacctggttcgactgaggtatctcagcagttggagtatctgtg |
492 |
Q |
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| T |
44858884 |
tttgttgttgaaattttcagttaaggttttggtgtttcttacaatgccgattgaacctggttcgactgaggtatctcagcagttggagtatctgtg |
44858979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 44858505 - 44858567
Alignment:
| Q |
18 |
gaaggcaaacgaatcggttattccaagggtgaatactgtctcggtatgaatgaatttgtttca |
80 |
Q |
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| T |
44858505 |
gaaggcaaacgaatcggttattccaagggtgaatactgtctcggtatgaatgaatttgtttca |
44858567 |
T |
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