View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_140 (Length: 232)
Name: NF1435_low_140
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_140 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 41988297 - 41988539
Alignment:
| Q |
1 |
actgccatatacgtaggaattttgataataaagagaatactgtttaatgtgctgaaaagataagaaaaagccttgagtctgatggagatgtaactggaat |
100 |
Q |
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| T |
41988297 |
actgccatatacgtaagaattttgataataaagagaatactgtttaatgtgctgaaaagataagaaaaagccttgagtctgatggagatgtaactggaat |
41988396 |
T |
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| Q |
101 |
cttttgaccgcacgtgtaaatctcctttatgaaagatatgtta-------------tgaaagatcgaaatcttgacaataacatgacattatcttagtat |
187 |
Q |
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| T |
41988397 |
cttttgaccgcacgtgtaaatctcctttatgaaagatatgttatgagaaggtgtgttgaatgatcgaaatcttgacaataacatgacattatcttagtat |
41988496 |
T |
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| Q |
188 |
gacactcttttttgtttattg-tttttcttgacagctgtgatc |
229 |
Q |
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| T |
41988497 |
gacactcttttttgtttattgttttttcttgacagctgtgatc |
41988539 |
T |
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