View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_141 (Length: 232)
Name: NF1435_low_141
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_141 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 28720859 - 28721071
Alignment:
| Q |
3 |
ttgacctggttgctctgctctattggaatgtttaccttaactatagacatgctcacatagatcaaaaggtttctgctttggtaggtgtttcaaaggaaga |
102 |
Q |
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| T |
28720859 |
ttgacctggttgctctgctctattggaatgtttaccttaactatagacatgctcacatagatcaaaaggtttctgctttgataggtgtttcaaaggaaga |
28720958 |
T |
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| Q |
103 |
agtcaaaaggtttgcttttagtatcaacttgcaggttattgttgaaacttatggcaaagttataataccctaggatcgactactactagtattaaccttt |
202 |
Q |
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| T |
28720959 |
agtcaaaaggtttgcttttagtatcaacgtccaggttattgttgaaacttatggcaaagttataataccctaggatcgactactactagtattaacc-tt |
28721057 |
T |
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| Q |
203 |
tgagttctagatat |
216 |
Q |
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|||||| ||||||| |
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| T |
28721058 |
tgagttatagatat |
28721071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 4244839 - 4244907
Alignment:
| Q |
62 |
gatcaaaaggtttctgctttggtaggtgtttcaaaggaagaagtcaaaaggtttgcttttagtatcaac |
130 |
Q |
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| T |
4244839 |
gatcaaaaggtttctgctttgatgggtgtttcaaaggaagaagtcaaaaggtttgcttttagtatcaac |
4244907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 4245323 - 4245366
Alignment:
| Q |
172 |
ctaggatcgactactactagtattaaccttttgagttctagatat |
216 |
Q |
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| T |
4245323 |
ctaggatcgactactactagtattaacc-tttgagttctagatat |
4245366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38053803 - 38053851
Alignment:
| Q |
1 |
acttgacctggttgctctgctctattggaatgtttaccttaactataga |
49 |
Q |
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| T |
38053803 |
acttgacctgtttgctctgctctattagaaagtttgccttagctataga |
38053851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 30254074 - 30253858
Alignment:
| Q |
1 |
acttgacctggttgctctgctctattggaatgtttaccttaactatagacatgctcacatagatcaaaaggtttctgctttg----gtaggtgtttcaaa |
96 |
Q |
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| T |
30254074 |
acttgacctggttgctctgctctattggaatgtttaccttaactatatacgtgctcacatagatcaaaaggactatgctttgatatataggtgtttcaaa |
30253975 |
T |
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| Q |
97 |
ggaagaagtcaaaaggtttgcttttagtatcaacttgcaggttattgttgaaacttatggcaaagttataataccctaggatcgactactactagtatta |
196 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
30253974 |
ggaagaagtcaaaaggtttgcttttagtatcaacatccaggttattgttgaaacttatggcaaagttataataccctaggatcgactactac--gtagta |
30253877 |
T |
|
| Q |
197 |
accttttgagttctagatat |
216 |
Q |
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||| |||||||||||||||| |
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| T |
30253876 |
acc-tttgagttctagatat |
30253858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11237688 - 11237735
Alignment:
| Q |
1 |
acttgacctggttgctctgctctattggaatgtttaccttaactatag |
48 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
11237688 |
acttgacctggttgctctactctattagaatgtttaccttaactatag |
11237735 |
T |
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