View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_144 (Length: 224)
Name: NF1435_low_144
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_144 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 40531960 - 40532154
Alignment:
| Q |
18 |
attcaaatcatgcaacatatgagtggacaaccaaatattgttgagtttaaaggtgcttatgaggataaaaattcagttcatgttgtaatggaactttgtg |
117 |
Q |
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| T |
40531960 |
attcaaatcatgcaacatatgagtggacaaccaaatattgttgagtttaaaggtgcttatgaggataaaaattcagttcatgttgtaatggaactttgtg |
40532059 |
T |
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| Q |
118 |
ctggtggtgaactttttgacaggattattgccaagggaaagtatagtgaaagagctgccgcttcaatttgtagacaaattgttaatgttgttcat |
212 |
Q |
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| T |
40532060 |
ctggtggtgaactttttgacaggattattgctaagggaaagtatagtgaaagagctgcagcttcaatttgtagacaaattgttaatgttgttcat |
40532154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 40536925 - 40537119
Alignment:
| Q |
18 |
attcaaatcatgcaacatatgagtggacaaccaaatattgttgagtttaaaggtgcttatgaggataaaaattcagttcatgttgtaatggaactttgtg |
117 |
Q |
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| T |
40536925 |
attcaaatcatgcagcatatgagtggacaaccaaatattgttgagtttaaaggtgcttatgaggatgaaaattcagttcatgttgttatggaactttgtg |
40537024 |
T |
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| Q |
118 |
ctggtggtgaactttttgacaggattattgccaagggaaagtatagtgaaagagctgccgcttcaatttgtagacaaattgttaatgttgttcat |
212 |
Q |
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| T |
40537025 |
ctggtggtgaactttatgatacgattattgccaaagggaaatatagtgaaagagatgcagcttcaatttttagacaaattgttaatgttgttcat |
40537119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 2478709 - 2478800
Alignment:
| Q |
54 |
attgttgagtttaaaggtgcttatgaggataaaaattcagttcatgttgtaatggaactttgtgctggtggtgaactttttgacaggattat |
145 |
Q |
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| T |
2478709 |
attgttgagcttaaaggtgcttatgaggatcgtcattcggttaatcttatcatggagctttgtgctggtggtgagctttttgataggattat |
2478800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 20501280 - 20501471
Alignment:
| Q |
18 |
attcaaatcatgcaacatatgagtggacaaccaaatattgttgagtttaaaggtgcttatgaggataaaaattcagttcatgttgtaatggaactttgtg |
117 |
Q |
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||||| |||||||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
20501280 |
attcagatcatgcaacatttgagtggtcaaccaaatattgttgaatttaaaggagcttatgaggataggaattcagttcatgttgttatggaactttgtg |
20501379 |
T |
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| Q |
118 |
ctggtggtgaactttttgacaggattattgccaagggaaagtatagtgaaagagctgccgcttcaatttgtagacaaattgttaatgttgtt |
209 |
Q |
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| T |
20501380 |
ctggtggtgaactttttgataggatcattgctaaaggacattatagtgaaaaagctgctgcttctatttgtagacagattgttaatgttgtt |
20501471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 55168098 - 55168201
Alignment:
| Q |
45 |
caaccaaatattgttgagtttaaaggtgcttatgaggataaaaattcagttcatgttgtaatggaactttgtgctggtggtgaactttttgacaggatta |
144 |
Q |
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||||| ||||||||||||||||||||||||| |||||||| | || || ||| |||| ||||||||||||||||||||||| | ||||| ||||||| |
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| T |
55168098 |
caaccgaatattgttgagtttaaaggtgcttttgaggatagattctctgtgcatcttgtgatggaactttgtgctggtggtgagttgtttgataggatta |
55168197 |
T |
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| Q |
145 |
ttgc |
148 |
Q |
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|||| |
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| T |
55168198 |
ttgc |
55168201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 41623194 - 41623114
Alignment:
| Q |
66 |
aaaggtgcttatgaggataaaaattcagttcatgttgtaatggaactttgtgctggtggtgaactttttgacaggattatt |
146 |
Q |
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||||||||||||||||||||| | || ||| | |||| ||||| |||||||||||||||||||||||||| |||||||| |
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| T |
41623194 |
aaaggtgcttatgaggataaacactctgttaaccttgttatggagctttgtgctggtggtgaactttttgatcggattatt |
41623114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 8404801 - 8404846
Alignment:
| Q |
39 |
agtggacaaccaaatattgttgagtttaaaggtgcttatgaggata |
84 |
Q |
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| T |
8404801 |
agtggacaaccaaacatagttgagttcaagggtgcttatgaggata |
8404846 |
T |
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