View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_145 (Length: 224)
Name: NF1435_low_145
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_145 |
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| [»] scaffold0208 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 6199332 - 6199540
Alignment:
| Q |
1 |
aattgaattgattgtggttttgtatctatacacgtaggccatcttttgtttgacatcatcattggctattttatgttattaaagtgattagctaatggat |
100 |
Q |
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| T |
6199332 |
aattgaattgattgtggttttgtatctatacacgtatgccatcttttgttttacatcatcattggctattttatgttattaaagtgtttagctaatggat |
6199431 |
T |
|
| Q |
101 |
acatatactgtatattcatgttatgatcataatcgataaataatataaagtgtgttattgtttgaacttgattatattgtagataatatgcattacatga |
200 |
Q |
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| T |
6199432 |
acatatactgtatattcatgttatgatcataatcgataaataatatagagtgtgttattgtttgaacttgattatattgtagataatatgccttacatga |
6199531 |
T |
|
| Q |
201 |
agtcctatt |
209 |
Q |
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| T |
6199532 |
attcctatt |
6199540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 9067044 - 9067256
Alignment:
| Q |
1 |
aattgaattgattgtggttttgtatctatacacgtaggccatcttttgtttgacatcatcattggctattttatgttattaaagtgattagctaatggat |
100 |
Q |
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| T |
9067044 |
aattgaattgattgtggttttgtatctatacacgtatgccatcttttgttttacatcatcattggctattttatgttattaaagtgattagctaatggat |
9067143 |
T |
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| Q |
101 |
a----catatactgtatattcatgttatgatcataatcgataaataatataaagtgtgttattgtttgaacttgattatattgtagataatatgcattac |
196 |
Q |
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| T |
9067144 |
acatgcatatactgtatattcatgttatgatcataatcgataaataatataaagtgtgttattgtttgaacttgattatattgtacataatatgccttac |
9067243 |
T |
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| Q |
197 |
atgaagtcctatt |
209 |
Q |
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| T |
9067244 |
atgaattcctatt |
9067256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 958 - 756
Alignment:
| Q |
1 |
aattgaattgattgtggttttgtatctatacacgtaggccatcttttgtttgacatcatcattggctattttatgttattaaagtgattagctaatggat |
100 |
Q |
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| T |
958 |
aattgaattgattgtggttttttatctatacacgtatgtcatcttttgttttacatcatcattggctatttt---ttattaaagtgattagctaatggat |
862 |
T |
|
| Q |
101 |
acatatactgtatattcatgttatgatcataatcgataaataatataaagtgtgttattgtttgaacttgattatattgtagataatatgcattacatga |
200 |
Q |
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| T |
861 |
acatatattgtatattcatgttatgatcataatcgataaataatat--agtgttttattgtttgaacttgattacagtgta-ataatatgccttacatga |
765 |
T |
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| Q |
201 |
agtcctatt |
209 |
Q |
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| T |
764 |
attcctatt |
756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 26907893 - 26907744
Alignment:
| Q |
1 |
aattgaattgattgtggttttgtatctatacacgtaggccatcttttgtttgacatcatcattggctattttatgttattaaagtgattagctaatggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26907893 |
aattgaattgattgtggttttgtatctatacacgtatgtcatcttttgttttacatcatcattggctatttt---ttattaaagtgattagctaatggat |
26907797 |
T |
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| Q |
101 |
acatatactgtatattcatgttatgatcataatcgataaataatataaagtgt |
153 |
Q |
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| T |
26907796 |
acgtatattgtatattcatgttatgatcataatcgataaataatataaagtgt |
26907744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 38 - 209
Target Start/End: Complemental strand, 17535894 - 17535719
Alignment:
| Q |
38 |
gccatcttttgtttgacatcatcattggctattttatgttattaaagtgattagctaatggatacatatactgtata-------ttcatgttatgatcat |
130 |
Q |
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||||||||||| || || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17535894 |
gccatcttttgctttacgtcatcattggctattttat---attaaagtgattagctaatggatacatatactgtatactcaatattcatgttatgatcat |
17535798 |
T |
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| Q |
131 |
aatcgataaataatataaagtgtgttattgtttgaacttgattatattgtagataatatgcattacatgaagtcctatt |
209 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||| ||||||||| ||||||| |
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| T |
17535797 |
aatcgataaataatataaagtgttttattgtttgaacttgattacaatgtagataatatgccttacatgaattcctatt |
17535719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 17008463 - 17008494
Alignment:
| Q |
1 |
aattgaattgattgtggttttgtatctataca |
32 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
17008463 |
aattgaattgattgtggttttgtatctataca |
17008494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 17540487 - 17540456
Alignment:
| Q |
1 |
aattgaattgattgtggttttgtatctataca |
32 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
17540487 |
aattgaattgattgtggttttgtatctataca |
17540456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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